Genome Instance

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{
    "data": {
        "type": "genomes",
        "id": "MGYG000000244",
        "attributes": {
            "genome-id": 8416,
            "geographic-range": [
                "North America",
                "Europe",
                "Asia",
                "Oceania",
                "South America",
                "Africa"
            ],
            "geographic-origin": "Asia",
            "accession": "MGYG000000244",
            "ena-genome-accession": null,
            "ena-sample-accession": null,
            "ena-study-accession": null,
            "ncbi-genome-accession": null,
            "ncbi-sample-accession": "SAMN09734916",
            "ncbi-study-accession": "PRJNA482748",
            "img-genome-accession": null,
            "patric-genome-accession": null,
            "length": 2464025,
            "num-contigs": 126,
            "n-50": 35827,
            "gc-content": 33.78,
            "type": "Isolate",
            "completeness": 100.0,
            "contamination": 0.0,
            "busco-completeness": null,
            "rna-5s": 73.11,
            "rna-16s": 99.61,
            "rna-23s": 99.83,
            "rna-5-8s": null,
            "rna-18s": null,
            "rna-28s": null,
            "trnas": 18.0,
            "nc-rnas": 29,
            "num-proteins": 2382,
            "eggnog-coverage": 94.12,
            "ipr-coverage": 90.18,
            "taxon-lineage": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelatoclostridiaceae;g__Catenibacterium;s__Catenibacterium sp000437715",
            "num-genomes-total": 693,
            "pangenome-size": 9930,
            "pangenome-core-size": 451,
            "pangenome-accessory-size": 9479,
            "last-update": "2024-01-23T13:30:10.405135",
            "first-created": "2021-12-07T19:57:48.423950"
        },
        "relationships": {
            "biome": {
                "data": {
                    "type": "biomes",
                    "id": "root:Host-associated:Human:Digestive system:Large intestine"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine?format=api"
                }
            },
            "downloads": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000244/downloads?format=api"
                }
            },
            "catalogue": {
                "data": {
                    "type": "genome-catalogues",
                    "id": "human-gut-v2-0-2"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genome-catalogues/human-gut-v2-0-2?format=api"
                }
            },
            "antismash-geneclusters": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000244/antismash-genecluster?format=api"
                }
            },
            "kegg-class-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000244/kegg-class?format=api"
                }
            },
            "cog-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000244/cogs?format=api"
                }
            },
            "kegg-modules-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000244/kegg-module?format=api"
                }
            }
        },
        "links": {
            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000244?format=api"
        }
    }
}