Genome Instance

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{
    "data": {
        "type": "genomes",
        "id": "MGYG000000167",
        "attributes": {
            "genome-id": 9147,
            "geographic-range": [
                "North America",
                "Europe",
                "Asia"
            ],
            "geographic-origin": "Asia",
            "accession": "MGYG000000167",
            "ena-genome-accession": null,
            "ena-sample-accession": null,
            "ena-study-accession": null,
            "ncbi-genome-accession": null,
            "ncbi-sample-accession": "SAMN09734298",
            "ncbi-study-accession": "PRJNA482748",
            "img-genome-accession": null,
            "patric-genome-accession": null,
            "length": 2290750,
            "num-contigs": 46,
            "n-50": 103354,
            "gc-content": 59.73,
            "type": "Isolate",
            "completeness": 100.0,
            "contamination": 0.81,
            "busco-completeness": null,
            "rna-5s": 94.12,
            "rna-16s": 99.61,
            "rna-23s": 99.45,
            "rna-5-8s": null,
            "rna-18s": null,
            "rna-28s": null,
            "trnas": 20.0,
            "nc-rnas": 20,
            "num-proteins": 1971,
            "eggnog-coverage": 94.37,
            "ipr-coverage": 93.2,
            "taxon-lineage": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella;s__Collinsella sp002232035",
            "num-genomes-total": 67,
            "pangenome-size": 4177,
            "pangenome-core-size": 547,
            "pangenome-accessory-size": 3630,
            "last-update": "2024-01-23T13:30:42.826323",
            "first-created": "2021-12-07T20:18:37.104689"
        },
        "relationships": {
            "downloads": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000167/downloads?format=api"
                }
            },
            "catalogue": {
                "data": {
                    "type": "genome-catalogues",
                    "id": "human-gut-v2-0-2"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genome-catalogues/human-gut-v2-0-2?format=api"
                }
            },
            "kegg-modules-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000167/kegg-module?format=api"
                }
            },
            "kegg-class-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000167/kegg-class?format=api"
                }
            },
            "antismash-geneclusters": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000167/antismash-genecluster?format=api"
                }
            },
            "cog-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000167/cogs?format=api"
                }
            },
            "biome": {
                "data": {
                    "type": "biomes",
                    "id": "root:Host-associated:Human:Digestive system:Large intestine"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine?format=api"
                }
            }
        },
        "links": {
            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000167?format=api"
        }
    }
}