HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"links": {
"first": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater/studies?format=api&page=1",
"last": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater/studies?format=api&page=8",
"next": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater/studies?format=api&page=2",
"prev": null
},
"data": [
{
"type": "studies",
"id": "MGYS00006570",
"attributes": {
"bioproject": "PRJEB71375",
"samples-count": 85,
"accession": "MGYS00006570",
"is-private": false,
"last-update": "2024-08-15T16:20:26",
"secondary-accession": "ERP156179",
"centre-name": "EMG",
"public-release-date": null,
"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA230567, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Engineered:Wastewater.",
"study-name": "EMG produced TPA metagenomics assembly of PRJNA230567 data set (Systems Biology of Lipid Accumulating Organisms).",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006570/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006570/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006570/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006570/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006570/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006570/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006570?format=api"
}
},
{
"type": "studies",
"id": "MGYS00006558",
"attributes": {
"bioproject": "PRJNA230567",
"samples-count": 89,
"accession": "MGYS00006558",
"is-private": false,
"last-update": "2023-12-19T12:35:08",
"secondary-accession": "SRP033648",
"centre-name": "Luxembourg Centre for Systems Biomedicine",
"public-release-date": null,
"study-abstract": "Characterization of microbial communities at the genomic, transcriptomic, proteomic and metabolomic levels, with a special interest on lipid accumulating bacterial populations, which are naturally enriched in biological wastewater treatment systems and may be harnessed for the conversion of mixed lipid substrates (wastewater) into biodiesel. The project aims to elucidate the genetic blueprints and the functional relevance of specific populations within the community. It focuses on within-population genetic and functional heterogeneity, trying to understand how fine-scale variations contribute to differing lipid accumulating phenotypes. Insights from this project will contribute to the understanding the functioning of microbial ecosystems, and improve optimization and modeling strategies for current and future biological wastewater treatment processes. This BioProject contains datasets derived from the same biological wastewater treatment plant. The date includes metagenomes, metatranscriptomes and organisms isolated in pure cultures.",
"study-name": "Systems Biology of Lipid Accumulating Organisms",
"data-origination": "HARVESTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006558/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006558/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006558/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006558/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006558/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006558/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006558?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005985",
"attributes": {
"bioproject": "PRJEB45225",
"samples-count": 1,
"accession": "MGYS00005985",
"is-private": false,
"last-update": "2022-03-11T21:49:39",
"secondary-accession": "ERP129301",
"centre-name": "EMG",
"public-release-date": null,
"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA593593, and was assembled with metaSPAdes v3.15.2. This project includes samples from the following biomes: root:Engineered:Wastewater.",
"study-name": "EMG produced TPA metagenomics assembly of PRJNA593593 data set (Sewage microbial communities from Oakland, California, United States - Biofuel Metagenome 10).",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005985/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005985/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005985/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005985/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005985/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005985/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005985?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005998",
"attributes": {
"bioproject": "PRJNA593594",
"samples-count": null,
"accession": "MGYS00005998",
"is-private": false,
"last-update": "2022-03-11T21:12:06",
"secondary-accession": "SRP270054",
"centre-name": "DOE Joint Genome Institute",
"public-release-date": null,
"study-abstract": "Sewage-derived enrichment culture (anaerobic medium, 0.1% glucose), biofilm phase",
"study-name": "Sewage microbial communities from Oakland, California, United States - Biofuel Metagenome 11",
"data-origination": "HARVESTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005998/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005998/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005998/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005998/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005998/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005998/biomes?format=api"
},
"data": []
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005998?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005997",
"attributes": {
"bioproject": "PRJEB45727",
"samples-count": 1,
"accession": "MGYS00005997",
"is-private": false,
"last-update": "2022-03-11T21:12:02",
"secondary-accession": "ERP129875",
"centre-name": "EMG",
"public-release-date": null,
"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA593594, and was assembled with metaSPAdes v3.15.2. This project includes samples from the following biomes: root:Engineered:Wastewater.",
"study-name": "EMG produced TPA metagenomics assembly of PRJNA593594 data set (Sewage microbial communities from Oakland, California, United States - Biofuel Metagenome 11).",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005997/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005997/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005997/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005997/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005997/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005997/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005997?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005986",
"attributes": {
"bioproject": "PRJNA593593",
"samples-count": 1,
"accession": "MGYS00005986",
"is-private": false,
"last-update": "2022-02-28T14:04:08",
"secondary-accession": "SRP270050",
"centre-name": "DOE Joint Genome Institute",
"public-release-date": null,
"study-abstract": "Sewage-derived enrichment culture (anaerobic medium, 0.1% glucose), planktonic phase",
"study-name": "Sewage microbial communities from Oakland, California, United States - Biofuel Metagenome 10",
"data-origination": "HARVESTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005986/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005986/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005986/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005986/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005986/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005986/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005986?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002316",
"attributes": {
"bioproject": "PRJEB24109",
"samples-count": 1,
"accession": "MGYS00002316",
"is-private": false,
"last-update": "2022-02-03T15:58:54",
"secondary-accession": "ERP105914",
"centre-name": "EMBL-EBI",
"public-release-date": null,
"study-abstract": "The activated sludge metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA340752. This project includes samples from the following biomes: Engineered, Wastewater, Activated Sludge.",
"study-name": "EMG produced TPA metagenomics assembly of the Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG metagenome (activated sludge metagenome) data set.",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002316/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002316/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002316/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002316/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002316/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002316/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Industrial wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Industrial%20wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002316?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005846",
"attributes": {
"bioproject": "PRJEB47494",
"samples-count": 110,
"accession": "MGYS00005846",
"is-private": false,
"last-update": "2021-11-18T06:32:39",
"secondary-accession": "ERP131768",
"centre-name": "EMG",
"public-release-date": null,
"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB27054, and was assembled with metaSPAdes v3.12.0. This project includes samples from the following biomes: root:Engineered:Wastewater:Water and sludge.",
"study-name": "EMG produced TPA metagenomics assembly of PRJEB27054 data set (Global surveillance of antimicrobial resistance).",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005846/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005846/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005846/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005846/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005846/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005846/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Water and sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Water%20and%20sludge?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005846?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005847",
"attributes": {
"bioproject": "PRJEB27054",
"samples-count": 109,
"accession": "MGYS00005847",
"is-private": false,
"last-update": "2021-11-17T00:54:21",
"secondary-accession": "ERP109094",
"centre-name": "DTU-GE",
"public-release-date": null,
"study-abstract": "Antimicrobial resistance (AMR) is one of the most serious global public health threats, however, obtaining representative data on AMR for healthy human populations is difficult. We characterized the bacterial resistome from untreated sewage from 79 sites in 60 countries. We found systematic differences in abundance and diversity of AMR genes between Europe/North-America/Oceania and Africa/Asia/South-America. Antimicrobial use data only explained a minor part of the AMR variation and no evidence for cross-selection between antimicrobial classes nor effect of travel by flight between sites were found. However, AMR abundance was strongly correlated with socio-economic, health and environmental factors, which we used to predict AMR abundances in all countries in the world. Our findings suggest that the global AMR gene diversity and abundance varies by region and are caused by national circumstances. Improving sanitation and health could potentially limit the global burden of AMR. We propose to use sewage for an ethically acceptable and economically feasible continuous global surveillance and prediction of AMR.",
"study-name": "Global surveillance of antimicrobial resistance",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005847/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005847/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005847/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005847/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005847/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005847/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Water and sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Water%20and%20sludge?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005847?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005802",
"attributes": {
"bioproject": "PRJEB43967",
"samples-count": 6,
"accession": "MGYS00005802",
"is-private": false,
"last-update": "2021-10-08T10:16:00",
"secondary-accession": "ERP127957",
"centre-name": "EMG",
"public-release-date": null,
"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB8087, and was assembled with SPAdes v3.11.1, metaSPAdes v3.12.0. This project includes samples from the following biomes: root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge.",
"study-name": "EMG produced TPA metagenomics assembly of PRJEB8087 data set (Metagenomes of Danish EBPR WWTPs).",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005802/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005802/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005802/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005802/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005802/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005802/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Nutrient%20removal:Biological%20phosphorus%20removal:Activated%20sludge?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005802?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005769",
"attributes": {
"bioproject": "PRJEB42552",
"samples-count": 11,
"accession": "MGYS00005769",
"is-private": false,
"last-update": "2021-07-28T17:07:01",
"secondary-accession": "ERP126430",
"centre-name": "EMG",
"public-release-date": null,
"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA479723, and was assembled with Flye v2.8.1. This project includes samples from the following biomes: root:Engineered:Wastewater:Water and sludge.",
"study-name": "EMG produced TPA metagenomics assembly of PRJNA479723 data set (Nanopore metagenomics).",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005769/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005769/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005769/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005769/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005769/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005769/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Water and sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Water%20and%20sludge?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005769?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005770",
"attributes": {
"bioproject": "PRJNA479723",
"samples-count": 10,
"accession": "MGYS00005770",
"is-private": false,
"last-update": "2021-07-28T16:48:03",
"secondary-accession": "SRP152758",
"centre-name": "The University of Hong Kong",
"public-release-date": null,
"study-abstract": "WWTPs nanopore metagenomics",
"study-name": "Nanopore metagenomics",
"data-origination": "HARVESTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005770/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005770/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005770/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005770/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005770/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005770/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Water and sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Water%20and%20sludge?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005770?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005741",
"attributes": {
"bioproject": "PRJDB4240",
"samples-count": 76,
"accession": "MGYS00005741",
"is-private": false,
"last-update": "2021-06-07T13:09:08",
"secondary-accession": "DRP003823",
"centre-name": "Mino/Satoh Laboratory, Department of Socio-cultural Environmental Studies, Graduate School of Frontier Sciences, The University of Tokyo",
"public-release-date": null,
"study-abstract": "The data is the whole sequence data for the \"Bacterial population dynamics in a laboratory activated sludge reactor monitored by pyrosequencing of 16S rRNA\", Satoh et al. (2013), Microbes and Environments, 28(1), 65-70. Bacterial community change in a laboratory activated sludge reactor was analyzed by NGS for around 8 months. A sudden disappearance of a major population was observed around day 50th, and periodical increase and recessions were observed for many of the observed OTUs.",
"study-name": "WL Reactor published in ME",
"data-origination": "HARVESTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005741/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005741/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005741/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005741/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005741/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005741/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Activated Sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Activated%20Sludge?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005741?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005435",
"attributes": {
"bioproject": "PRJEB32216",
"samples-count": 5,
"accession": "MGYS00005435",
"is-private": false,
"last-update": "2020-11-17T19:19:21",
"secondary-accession": "ERP114866",
"centre-name": "EMG",
"public-release-date": null,
"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA472060. This project includes samples from the following biomes: root:Engineered:Wastewater:Water and sludge.",
"study-name": "EMG produced TPA metagenomics assembly of the PRJNA472060 data set (Reclaimed water Metagenome).",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005435/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005435/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005435/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005435/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005435/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005435/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Water and sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Water%20and%20sludge?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005435?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005614",
"attributes": {
"bioproject": "PRJEB39978",
"samples-count": 8,
"accession": "MGYS00005614",
"is-private": false,
"last-update": "2020-10-09T09:35:00",
"secondary-accession": "ERP123561",
"centre-name": "EMG",
"public-release-date": null,
"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB34410, and was assembled with metaSPAdes v3.13.1. This project includes samples from the following biomes: root:Engineered:Wastewater.",
"study-name": "EMG produced TPA metagenomics assembly of PRJEB34410 data set (Secrets of the hospital underbelly: abundance of antimicrobial resistance genes in hospital wastewater reflects hospital antimicrobial use and inpatient length of stay).",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005614/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005614/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005614/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005614/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005614/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005614/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005614?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005617",
"attributes": {
"bioproject": "PRJNA634990",
"samples-count": 88,
"accession": "MGYS00005617",
"is-private": false,
"last-update": "2020-10-06T09:38:16",
"secondary-accession": "SRP264663",
"centre-name": "Khalifa University",
"public-release-date": null,
"study-abstract": "16S sequencing from samples collected from the aeration tank of a full scale wastewater treatment plant in the UAE over a 10 month period",
"study-name": "16S sequencing from full scale WWTP - UAE",
"data-origination": "HARVESTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005617/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005617/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005617/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005617/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005617/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005617/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005617?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005615",
"attributes": {
"bioproject": "PRJEB34410",
"samples-count": 7,
"accession": "MGYS00005615",
"is-private": false,
"last-update": "2020-10-05T17:25:19",
"secondary-accession": "ERP117308",
"centre-name": "UNIVERSITY OF EDINBURGH",
"public-release-date": null,
"study-abstract": "Hospitals are nodal points for antimicrobial consumption and identification of resistant pathogens and therefore hospital wastewater is a potential major source of AMR. This study uses metagenomics to study how the abundances of resistance genes in hospital wastewater are related to clinical activity within different buildings of the hospital. Sewage was collected over a 24-hour period from multiple wastewater collection points representing different specialties within a tertiary hospital site and simultaneously from community sewage works. High throughput shotgun sequencing was performed using Illumina HiSeq4000. Sequence reads were assigned taxonomically and to the AMR genes in the ResFinder database. The measured AMR gene abundances were then correlated to hospital antimicrobial usage (AMU), other data on clinical activity such as patient/ward characteristics and resistance prevalence in clinical isolates.",
"study-name": "Secrets of the hospital underbelly: abundance of antimicrobial resistance genes in hospital wastewater reflects hospital antimicrobial use and inpatient length of stay",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005615/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005615/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005615/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005615/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005615/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005615/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005615?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005418",
"attributes": {
"bioproject": "PRJEB33180",
"samples-count": 54,
"accession": "MGYS00005418",
"is-private": false,
"last-update": "2020-05-22T07:22:20",
"secondary-accession": "ERP115950",
"centre-name": "EMG",
"public-release-date": null,
"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJEB13832. This project includes samples from the following biomes: root:Engineered:Wastewater:Water and sludge.",
"study-name": "EMG produced TPA metagenomics assembly of the PRJEB13832 data set (Local surveillance of infectious diseases and antimicrobial resistance from sewage).",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005418/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005418/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005418/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005418/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005418/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005418/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Water and sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Water%20and%20sludge?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005418?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005436",
"attributes": {
"bioproject": "PRJNA472060",
"samples-count": 5,
"accession": "MGYS00005436",
"is-private": false,
"last-update": "2020-05-22T02:46:46",
"secondary-accession": "SRP148583",
"centre-name": "University of Maryland",
"public-release-date": null,
"study-abstract": "Zero valent iron filtered and unfiltered reclaimed water collected from a tertiary wastewater treatment plant in the Mid-Atlantic United States.",
"study-name": "Reclaimed water Metagenome",
"data-origination": "HARVESTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005436/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005436/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005436/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005436/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005436/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005436/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Water and sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Water%20and%20sludge?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005436?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005431",
"attributes": {
"bioproject": "PRJEB33270",
"samples-count": 6,
"accession": "MGYS00005431",
"is-private": false,
"last-update": "2020-05-22T02:40:41",
"secondary-accession": "ERP116047",
"centre-name": "EMG",
"public-release-date": null,
"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJEB22104. This project includes samples from the following biomes: root:Engineered:Wastewater.",
"study-name": "EMG produced TPA metagenomics assembly of the PRJEB22104 data set (Unusual ecophysiology of Candidate phylum Acetothermia bacteria associated with anaerobic digesters revealed by complete genome sequencing and advanced in situ microscopy).",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005431/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005431/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005431/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005431/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005431/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005431/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005431?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005432",
"attributes": {
"bioproject": "PRJEB22104",
"samples-count": 5,
"accession": "MGYS00005432",
"is-private": false,
"last-update": "2020-05-22T02:28:51",
"secondary-accession": "ERP024437",
"centre-name": "AALBORG UNIVERSITY",
"public-release-date": null,
"study-abstract": "Members of the candidate phylum Acetothermia are globally distributed and have been detected in diverse natural habitats as well as engineered systems. However, little is known about their physiology and ecological importance. In this study, an OTU belonging to Acetothermia was identified as one of the most abundant genus-level bacterial taxa in full-scale mesophilic anaerobic digesters at two Danish wastewater treatment plants. A closed genome was obtained by differential coverage binning of metagenomes and long Nanopore reads. Genome annotation and metabolic reconstruction revealed an anaerobic chemoheterotrophic lifestyle in which the bacterium obtain energy and carbon from the fermentation of peptides, amino acids, and simple sugars to acetate, formate and hydrogen. In contrast to previously studied Acetothermia, the genome did not encode a functional acetyl-CoA pathway required for acetogenesis. Fluorescent in situ hybridization probes targeting Acetothermia were designed and used in combination with confocal laser scanning microscopy and atomic force microscopy. This revealed an unusual morphology composed of a central rod cell with bipolar prosthecae similar to those observed in Caulobacter and Asticcacaulis. These prosthecae greatly expand the cell surface to volume ratio and allow for increased nutrient uptake, providing the bacteria with a competitive advantage under nutrient limited conditions.",
"study-name": "Unusual ecophysiology of Candidate phylum Acetothermia bacteria associated with anaerobic digesters revealed by complete genome sequencing and advanced in situ microscopy",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005432/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005432/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005432/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005432/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005432/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005432/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005432?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002319",
"attributes": {
"bioproject": "PRJEB24354",
"samples-count": 4,
"accession": "MGYS00002319",
"is-private": false,
"last-update": "2020-05-17T13:40:40",
"secondary-accession": "ERP106170",
"centre-name": "EMBL-EBI",
"public-release-date": null,
"study-abstract": "The sludge metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA427366. This project includes samples from the following biomes: Engineered, Wastewater, Water and sludge.",
"study-name": "EMG produced TPA metagenomics assembly of the sludge metagenome Metagenomic assembly (sludge metagenome) data set.",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002319/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002319/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002319/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002319/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002319/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002319/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Activated Sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Activated%20Sludge?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002319?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005349",
"attributes": {
"bioproject": "PRJNA427366",
"samples-count": 3,
"accession": "MGYS00005349",
"is-private": false,
"last-update": "2020-05-17T13:05:32",
"secondary-accession": "SRP127484",
"centre-name": "CSIR-National Environmental Engineering Research Institute",
"public-release-date": null,
"study-abstract": "Sludge from the petroleum refinery having phenol-degrading bacteria for the study of genetic evolution in bacteria",
"study-name": "sludge metagenome Metagenomic assembly",
"data-origination": "HARVESTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005349/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005349/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005349/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005349/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005349/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005349/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Activated Sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Activated%20Sludge?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005349?format=api"
}
},
{
"type": "studies",
"id": "MGYS00005279",
"attributes": {
"bioproject": "PRJEB29847",
"samples-count": 1,
"accession": "MGYS00005279",
"is-private": false,
"last-update": "2020-05-14T00:20:23",
"secondary-accession": "ERP112197",
"centre-name": "EMG",
"public-release-date": null,
"study-abstract": "The wastewater metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA377111. This project includes samples from the following biomes: Engineered, Wastewater.",
"study-name": "EMG produced TPA metagenomics assembly of the Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_biof metagenome (wastewater metagenome) data set.",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005279/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005279/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005279/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005279/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005279/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005279/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00005279?format=api"
}
},
{
"type": "studies",
"id": "MGYS00002039",
"attributes": {
"bioproject": "PRJEB22521",
"samples-count": 5,
"accession": "MGYS00002039",
"is-private": false,
"last-update": "2020-05-13T16:41:59",
"secondary-accession": "ERP104202",
"centre-name": "EMBL-EBI",
"public-release-date": null,
"study-abstract": "The Swedish STPs Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB14051. This project includes samples from the following biomes : Sludge.",
"study-name": "EMG produced TPA metagenomics assembly of the Metagenomic characterization of three Swedish sewage treatment plants (Swedish STPs) data set",
"data-origination": "SUBMITTED"
},
"relationships": {
"downloads": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002039/downloads?format=api"
}
},
"publications": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002039/publications?format=api"
}
},
"geocoordinates": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002039/geocoordinates?format=api"
}
},
"analyses": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002039/analyses?format=api"
}
},
"samples": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002039/samples?format=api"
}
},
"biomes": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002039/biomes?format=api"
},
"data": [
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Activated Sludge",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Activated%20Sludge?format=api"
}
},
{
"type": "biomes",
"id": "root:Engineered:Wastewater:Industrial wastewater",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Wastewater:Industrial%20wastewater?format=api"
}
}
]
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002039?format=api"
}
}
],
"meta": {
"pagination": {
"page": 1,
"pages": 8,
"count": 186
}
}
}