Download data from MetaboLights

Pre-packaged ISAcreator download. To make it easy for new users, please download and just unzip our pre-packaged ISAcreator with plugin and configurations.

Experiments. All public MetaboLights experiments can be downloaded from our public ftp archive. Please find zip archives under the "studies" folder. Each public study can be found in the corresponding MTBLS-id folder. Complete experiments can be opened with ISAcreator or you can extract the archives using your normal unzip program.

If you want a local copy of the MetaboLights repository, please download and install MetaboLights from here. To populate your local MetaboLights database, you simply upload experiments (Studies) of interest.

Please take a look at our comprehensive help section. You can also take a look at the isatools YouTube channel for a general introduction to ISAcreator.

MetaboLights XML exports can be downloaded using the following links:

MetaboLights - Complete  | MetaboLights


MetaboLights submissions are powered by the ISA software suite. so experimental data gets submitted in ISA-Tab format. The Investigation/Study/Assay (ISA) infrastructure is the first general-purpose format and freely available desktop software suite targeted to experimentalists, curators and developers and that assists in the reporting and local management of experimental metadata (i.e. sample characteristics, technology and measurement types, sample-to-data relationships) from studies employing one or a combination of technologies.