Download data from MetaboLights

Metabolights Studies All public MetaboLights studies can be downloaded from our public FTP site. Server : ; directory path : /pub/databases/metabolights/studies/public/ (You would need a FTP client software like Filezilla to access and download). Please find the zip archives under the "public" folder. Each public study can be found in the corresponding MTBLS-id folder.
Please check our guides for more information on how to download data from MetaboLights.

If you want a local copy of the MetaboLights repository, please download and install MetaboLights from here. To populate your local MetaboLights database, you simply upload Studies of interest.

MetaboLights study metadata and compounds can be downloaded as XML format. Please use the below links:

MetaboLights - Complete  | MetaboLights

ISA model support


MetaboLights submissions are powered by the ISA software suite. so experimental data gets submitted in ISA-Tab format. The Investigation/Study/Assay (ISA) infrastructure is the first general-purpose format and freely available desktop software suite targeted to experimentalists, curators and developers and that assists in the reporting and local management of experimental metadata (i.e. sample characteristics, technology and measurement types, sample-to-data relationships) from studies employing one or a combination of technologies.

MetaboLights ISAcreator software download To make it easy for new users, please download and just unzip our pre-packaged ISAcreator with plugin and configurations.

You can also take a look at the isatools YouTube channel for a general introduction to ISAcreator. Please take a look at our comprehensive help section for online study submission and ISA creator.