You can download data for every dataset individually in Expression Atlas through our
From experiment pages
You can download single experiment files from the Downloads tab in any experiment page. Below is
a short summary about data that you can download in both differential and baseline experiments. If you
want to know more about either one, please read the help sections
“Differential experiment page” and
“Baseline experiment page”, respectively.
Differential expression results
You can download filtered expression results as a TSV file clicking on the
button. Genes for which the log2 fold change is 0 are not included.
For all differential experiments, click on the
button to download all the analytics in the experiment.
Data used for differential expression analysis
For single-channel microarray experiments you can download the normalized intensities using the
For two-channel microarray experiments you can download the log2 fold changes using
For RNA-seq experiments you can download the raw counts generated by
htseq-count using the
You can also download data ready to load into R by clicking the
icon. See our help page about Expression Atlas data in R
for more details.
Download the baseline expression results
To download the full results of your query in tab–delimited format with no ordering, click on the
download button to the right of the heatmap on baseline search results page.