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Study accession ID: J1_SyM

Study title:
JCB Metazoan actinome
Organism and cell line:
Homo sapiens, Drosophila melanogaster
J1_SyM_1 — HeLa
J1_SyM_2 — R3A4
Description:
Although a large number of actin-binding proteins and their regulators have been identified through classical approaches, gaps in our knowledge remain. Here, we used genome-wide RNA interference as a systematic method to define metazoan actin regulators based on visual phenotype. Using comparative screens in cultured Drosophila and human cells, we generated phenotypic profiles for annotated actin regulators together with proteins bearing predicted actin-binding domains. These phenotypic clusters for the known metazoan “actinome” were used to identify putative new core actin regulators, together with a number of genes with conserved but poorly studied roles in the regulation of the actin cytoskeleton, several of which we studied in detail. This work suggests that although our search for new components of the core actin machinery is nearing saturation, regulation at the level of nuclear actin export, RNA splicing, ubiquitination, and other upstream processes remains an important but unexplored frontier of actin biology.
Publication:
Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype.
5;194(5):789-805
Authors:
Rohn JL, Sims D, Liu T, Fedorova M, Schöck F, Dopie J, Vartiainen MK, Kiger AA, Perrimon N, Baum B.
Phenotypes:
browse
Download:
Study Description file (31.434kB)

Spreadsheet file(s):

Primary screen data:
J1_SyM_1 ZIP (2.037kB)
Primary screen data:
J1_SyM_2 ZIP (7.682kB)
External URL:
http://jcb-dataviewer.rupress.org/jcb/browse/4609/