IHECRE00004698.6 LIVE IHEC harmonized v2.0 JSON  

Species Homo sapiens
Type Single donor
Status Partial
Project ENCODE
Description Reference epigenome for human Caco-2 cell line
Previous versions IHECRE00004698.5   IHECRE00004698.4   IHECRE00004698.3   IHECRE00004698.2   IHECRE00004698.1  

Metadata


Biomaterial type cell line
Cell line Caco-2
Biospecimen
    Broad label cancer cell line
    Intermediate label cancer cell line
    Curated label Colon Adenocarcinoma Cell Line
    Ontology curie EFO:0001099
Biospecimen disease
    Broad label Cancer
    Intermediate label Carcinoma
    Curated label Colorectal Adenocarcinoma
    Ontology curie NCIM:C1319315
Donor
    Type Single donor
    Age unknown
    Age unit unknown
    Life stage unknown
    Sex male
    Health status ontology curie NCIM:C0549184

Experimental data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ChIP-Seq ChIP-Seq Input ENCODE ENCSR000DQJ None https://www.encodeproject.org/experiments/ENCSR000DQJ
ChIP-Seq Histone H3K36me3 ENCODE ENCSR000DQK None https://www.encodeproject.org/experiments/ENCSR000DQK
ChIP-Seq Histone H3K27me3 ENCODE ENCSR000DQL None https://www.encodeproject.org/experiments/ENCSR000DQL
ChIP-Seq Histone H3K4me3 ENCODE ENCSR000DQM None https://www.encodeproject.org/experiments/ENCSR000DQM
ChIP-Seq Transcription Factor ENCODE ENCSR000DQN None https://www.encodeproject.org/experiments/ENCSR000DQN
DNase-Hypersensitivity Chromatin Accessibility ENCODE ENCSR030HFV None https://www.encodeproject.org/experiments/ENCSR030HFV
ChIP-Seq Histone H3K4me1 ENCODE ENCSR061UOM None https://www.encodeproject.org/experiments/ENCSR061UOM
ChIP-Seq ChIP-Seq Input ENCODE ENCSR269OND None https://www.encodeproject.org/experiments/ENCSR269OND
ChIP-Seq Histone H3K9me3 ENCODE ENCSR401WUV None https://www.encodeproject.org/experiments/ENCSR401WUV