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CHEBI:85392 - 5'-UGGGAAGACA-3'

ChEBI IDCHEBI:85392
ChEBI Name5'-UGGGAAGACA-3'
Stars
DefinitionA synthetic RNA fragment comprised of one uridine, one cytidine, four adenosine and four guanosine residues connected by 3'→5' phosphodiester linkages in the sequence U-G-G-G-A-A-G-A-C-A.
Last Modified7 April 2015
SubmitterMarcus Ennis
DownloadsMolfile
FormulaC98H120N45O65P9
Net Charge0
Average Mass3247.054
Monoisotopic Mass3245.51064
SMILESNc1ccn([C@@H]2O[C@H](COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4ccc(=O)nc4=O)O[C@@H]3CO)[C@@H](OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](O)[C@@H]3O)[C@H]2O)c(=O)n1
InChIInChI=1S/C98H120N45O65P9/c99-37-1-3-134(97(161)124-37)85-50(149)59(201-209(163,164)181-6-28-47(146)48(147)83(191-28)136-19-116-39-67(100)108-15-112-71(39)136)29(192-85)7-183-211(167,168)202-60-31(194-86(51(60)150)137-20-117-40-68(101)109-16-113-72(40)137)9-185-214(173,174)206-64-34(197-90(55(64)154)141-24-121-44-76(141)127-94(105)131-80(44)158)12-187-213(171,172)204-62-30(193-88(53(62)152)139-22-119-42-70(103)111-18-115-74(42)139)8-184-212(169,170)203-61-32(195-87(52(61)151)138-21-118-41-69(102)110-17-114-73(41)138)10-186-215(175,176)207-65-35(198-91(56(65)155)142-25-122-45-77(142)128-95(106)132-81(45)159)13-189-217(179,180)208-66-36(199-92(57(66)156)143-26-123-46-78(143)129-96(107)133-82(46)160)14-188-216(177,178)205-63-33(196-89(54(63)153)140-23-120-43-75(140)126-93(104)130-79(43)157)11-182-210(165,166)200-58-27(5-144)190-84(49(58)148)135-4-2-38(145)125-98(135)162/h1-4,15-36,47-66,83-92,144,146-156H,5-14H2,(H,163,164)(H,165,166)(H,167,168)(H,169,170)(H,171,172)(H,173,174)(H,175,176)(H,177,178)(H,179,180)(H2,99,124,161)(H2,100,108,112)(H2,101,109,113)(H2,102,110,114)(H2,103,111,115)(H,125,145,162)(H3,104,126,130,157)(H3,105,127,131,158)(H3,106,128,132,159)(H3,107,129,133,160)/t27-,28-,29-,30-,31-,32-,33-,34-,35-,36-,47-,48-,49-,50-,51-,52-,53-,54-,55-,56-,57-,58-,59-,60-,61-,62-,63-,64-,65-,66-,83-,84-,85-,86-,87-,88-,89-,90-,91-,92-/m1/s1
InChIKeyXUUHXYKJVUNYDZ-ASAJOGCYSA-N
ChEBI Ontology
Outgoing Relation(s)
5'-UGGGAAGACA-3' (CHEBI:85392) is a RNA fragment (CHEBI:82726)
IUPAC Name 
U-G-G-G-A-A-G-A-C-A
Synonym  Source
UpGpGpGpApApGpApCpAChEBI
Citations