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CHEBI:85389 - 5'-AAGUCUCCACUCGAGUGUCCGAGCG-3' RNA fragment

ChEBI IDCHEBI:85389
ChEBI Name5'-AAGUCUCCACUCGAGUGUCCGAGCG-3' RNA fragment
Stars
DefinitionA synthetic RNA fragment comprised of five adenosine, seven guanosine, five uridine and eight cytidine residues connected by 3'→5' phosphodiester linkages in the sequence A-A-G-U-C-U-C-C-A-C-U-C-G-A-G-U-G-U-C-C-G-A-G-C-G.
Last Modified7 April 2015
SubmitterMarcus Ennis
DownloadsMolfile
FormulaC237H296N94O173P24
Net Charge0
Average Mass7972.836
Monoisotopic Mass7969.09567
SMILESNc1ccn([C@@H]2O[C@H](COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4ccc(=O)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4ccc(=O)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(N)ncnc54)O[C@@H]3CO)[C@@H](OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(=O)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(=O)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(=O)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3O)[C@H]2O)c(=O)n1
InChIInChI=1S/C237H296N94O173P24/c238-94-1-14-307(225(371)280-94)194-122(341)146(482-505(384,385)432-28-70-119(338)120(339)193(457-70)325-62-273-112-179(325)293-218(251)300-186(112)364)71(458-194)29-443-520(414,415)499-164-91(478-213(140(164)359)327-64-275-114-181(327)295-220(253)302-188(114)366)50-454-525(424,425)497-161-86(473-210(137(161)356)323-60-271-110-172(249)261-55-266-177(110)323)44-448-527(428,429)503-167-89(476-216(143(167)362)330-67-278-117-184(330)298-223(256)305-191(117)369)46-450-516(406,407)488-152-76(463-200(128(152)347)313-20-7-100(244)286-231(313)377)31-435-508(390,391)484-148-73(460-196(124(148)343)309-16-3-96(240)282-227(309)373)33-437-513(400,401)492-156-81(468-204(132(156)351)317-24-11-104(335)290-235(317)381)39-444-521(416,417)500-163-88(475-212(139(163)358)326-63-274-113-180(326)294-219(252)301-187(113)365)48-452-518(410,411)494-158-83(470-206(134(158)353)319-26-13-106(337)292-237(319)383)41-446-523(420,421)502-166-93(480-215(142(166)361)329-66-277-116-183(329)297-222(255)304-190(116)368)51-455-526(426,427)498-162-87(474-211(138(162)357)324-61-272-111-173(250)262-56-267-178(111)324)45-449-528(430,431)504-168-90(477-217(144(168)363)331-68-279-118-185(331)299-224(257)306-192(118)370)47-451-517(408,409)489-153-77(464-201(129(153)348)314-21-8-101(245)287-232(314)378)35-439-512(398,399)491-155-80(467-203(131(155)350)316-23-10-103(334)289-234(316)380)38-441-510(394,395)486-150-78(465-198(126(150)345)311-18-5-98(242)284-229(311)375)36-442-519(412,413)495-160-85(472-209(136(160)355)322-59-270-109-171(248)260-54-265-176(109)322)43-447-515(404,405)487-151-75(462-199(127(151)346)312-19-6-99(243)285-230(312)376)30-434-507(388,389)483-147-72(459-195(123(147)342)308-15-2-95(239)281-226(308)372)32-436-511(396,397)490-154-79(466-202(130(154)349)315-22-9-102(333)288-233(315)379)37-440-509(392,393)485-149-74(461-197(125(149)344)310-17-4-97(241)283-228(310)374)34-438-514(402,403)493-157-82(469-205(133(157)352)318-25-12-105(336)291-236(318)382)40-445-522(418,419)501-165-92(479-214(141(165)360)328-65-276-115-182(328)296-221(254)303-189(115)367)49-453-524(422,423)496-159-84(471-208(135(159)354)321-58-269-108-170(247)259-53-264-175(108)321)42-433-506(386,387)481-145-69(27-332)456-207(121(145)340)320-57-268-107-169(246)258-52-263-174(107)320/h1-26,52-93,119-168,193-217,332,338-363H,27-51H2,(H,384,385)(H,386,387)(H,388,389)(H,390,391)(H,392,393)(H,394,395)(H,396,397)(H,398,399)(H,400,401)(H,402,403)(H,404,405)(H,406,407)(H,408,409)(H,410,411)(H,412,413)(H,414,415)(H,416,417)(H,418,419)(H,420,421)(H,422,423)(H,424,425)(H,426,427)(H,428,429)(H,430,431)(H2,238,280,371)(H2,239,281,372)(H2,240,282,373)(H2,241,283,374)(H2,242,284,375)(H2,243,285,376)(H2,244,286,377)(H2,245,287,378)(H2,246,258,263)(H2,247,259,264)(H2,248,260,265)(H2,249,261,266)(H2,250,262,267)(H,288,333,379)(H,289,334,380)(H,290,335,381)(H,291,336,382)(H,292,337,383)(H3,251,293,300,364)(H3,252,294,301,365)(H3,253,295,302,366)(H3,254,296,303,367)(H3,255,297,304,368)(H3,256,298,305,369)(H3,257,299,306,370)/t69-,70-,71-,72-,73-,74-,75-,76-,77-,78-,79-,80-,81-,82-,83-,84-,85-,86-,87-,88-,89-,90-,91-,92-,93-,119-,120-,121-,122-,123-,124-,125-,126-,127-,128-,129-,130-,131-,132-,133-,134-,135-,136-,137-,138-,139-,140-,141-,142-,143-,144-,145-,146-,147-,148-,149-,150-,151-,152-,153-,154-,155-,156-,157-,158-,159-,160-,161-,162-,163-,164-,165-,166-,167-,168-,193-,194-,195-,196-,197-,198-,199-,200-,201-,202-,203-,204-,205-,206-,207-,208-,209-,210-,211-,212-,213-,214-,215-,216-,217-/m1/s1
InChIKeyLOABNHROSUFOPF-STXZESHISA-N
ChEBI Ontology
Outgoing Relation(s)
5'-AAGUCUCCACUCGAGUGUCCGAGCG-3' RNA fragment (CHEBI:85389) is a RNA fragment (CHEBI:82726)
IUPAC Name 
A-A-G-U-C-U-C-C-A-C-U-C-G-A-G-U-G-U-C-C-G-A-G-C-G
Synonym  Source
ApApGpUpCpUpCpCpApCpUpCpGpApGpUpGpUpCpCpGpApGpCpGChEBI
Citations