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CHEBI:84480 - 5'-CGAAAGUCCGAUCGGCGUAAUGUCA-3' RNA fragment

ChEBI IDCHEBI:84480
ChEBI Name5'-CGAAAGUCCGAUCGGCGUAAUGUCA-3' RNA fragment
Stars
DefinitionAn RNA fragment comprised of six cytidine, seven guanosine, seven adenosine and five uridine residues connected by 3'→5' phosphodiester linkages in the sequence C-G-A-A-A-G-U-C-C-G-A-U-C-G-G-C-G-U-A-A-U-G-U-C-A.
Last Modified7 April 2015
SubmitterMarcus Ennis
DownloadsMolfile
FormulaC239H297N98O174P25
Net Charge0
Average Mass8100.867
Monoisotopic Mass8097.08447
SMILESNc1ccn([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(=O)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(=O)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(=O)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(=O)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(=O)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)[C@H](O)[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](O)[C@@H]3OP(=O)(O)O)[C@H]2O)c(=O)n1
InChIInChI=1S/C239H297N98O174P25/c240-94-1-12-313(229(376)288-94)197-119(344)144(69(23-338)462-197)488-513(390,391)439-41-87-162(137(362)215(480-87)331-62-281-112-183(331)299-222(253)306-190(112)369)509-534(432,433)454-40-86-160(135(360)213(479-86)329-60-279-110-174(251)265-53-272-181(110)329)503-532(428,429)452-37-83-159(134(359)212(476-83)328-59-278-109-173(250)264-52-271-180(109)328)502-531(426,427)453-38-84-161(136(361)214(477-84)330-61-280-111-175(252)266-54-273-182(111)330)504-533(430,431)460-46-92-165(140(365)218(485-92)334-65-284-115-186(334)302-225(256)309-193(115)372)508-529(422,423)448-33-79-153(128(353)205(471-79)321-20-9-102(341)296-237(321)384)496-517(398,399)442-27-72-147(122(347)199(464-72)315-14-3-96(242)290-231(315)378)490-515(394,395)440-26-73-148(123(348)200(465-73)316-15-4-97(243)291-232(316)379)491-520(404,405)457-43-90-167(142(367)220(483-90)336-67-286-117-188(336)304-227(258)311-195(117)374)510-535(434,435)455-39-85-157(132(357)210(478-85)326-57-276-107-171(248)262-50-269-178(107)326)500-524(412,413)445-30-76-151(126(351)203(468-76)319-18-7-100(339)294-235(319)382)494-518(400,401)443-28-74-149(124(349)201(466-74)317-16-5-98(244)292-233(317)380)492-521(406,407)458-44-91-168(143(368)221(484-91)337-68-287-118-189(337)305-228(259)312-196(118)375)511-536(436,437)461-47-93-166(141(366)219(486-93)335-66-285-116-187(335)303-226(257)310-194(116)373)505-526(416,417)444-29-75-150(125(350)202(467-75)318-17-6-99(245)293-234(318)381)493-522(408,409)456-42-88-163(138(363)216(481-88)332-63-282-113-184(332)300-223(254)307-191(113)370)506-528(420,421)449-34-80-154(129(354)206(472-80)322-21-10-103(342)297-238(322)385)497-519(402,403)450-35-81-158(133(358)211(474-81)327-58-277-108-172(249)263-51-270-179(108)327)501-530(424,425)451-36-82-156(131(356)209(475-82)325-56-275-106-170(247)261-49-268-177(106)325)499-525(414,415)446-31-77-155(130(355)207(469-77)323-22-11-104(343)298-239(323)386)498-523(410,411)459-45-89-164(139(364)217(482-89)333-64-283-114-185(333)301-224(255)308-192(114)371)507-527(418,419)447-32-78-152(127(352)204(470-78)320-19-8-101(340)295-236(320)383)495-516(396,397)441-25-71-146(121(346)198(463-71)314-13-2-95(241)289-230(314)377)489-514(392,393)438-24-70-145(487-512(387,388)389)120(345)208(473-70)324-55-274-105-169(246)260-48-267-176(105)324/h1-22,48-93,119-168,197-221,338,344-368H,23-47H2,(H,390,391)(H,392,393)(H,394,395)(H,396,397)(H,398,399)(H,400,401)(H,402,403)(H,404,405)(H,406,407)(H,408,409)(H,410,411)(H,412,413)(H,414,415)(H,416,417)(H,418,419)(H,420,421)(H,422,423)(H,424,425)(H,426,427)(H,428,429)(H,430,431)(H,432,433)(H,434,435)(H,436,437)(H2,240,288,376)(H2,241,289,377)(H2,242,290,378)(H2,243,291,379)(H2,244,292,380)(H2,245,293,381)(H2,246,260,267)(H2,247,261,268)(H2,248,262,269)(H2,249,263,270)(H2,250,264,271)(H2,251,265,272)(H2,252,266,273)(H,294,339,382)(H,295,340,383)(H,296,341,384)(H,297,342,385)(H,298,343,386)(H2,387,388,389)(H3,253,299,306,369)(H3,254,300,307,370)(H3,255,301,308,371)(H3,256,302,309,372)(H3,257,303,310,373)(H3,258,304,311,374)(H3,259,305,312,375)/t69-,70-,71-,72-,73-,74-,75-,76-,77-,78-,79-,80-,81-,82-,83-,84-,85-,86-,87-,88-,89-,90-,91-,92-,93-,119-,120-,121-,122-,123-,124-,125-,126-,127-,128-,129-,130-,131-,132-,133-,134-,135-,136-,137-,138-,139-,140-,141-,142-,143-,144-,145-,146-,147-,148-,149-,150-,151-,152-,153-,154-,155-,156-,157-,158-,159-,160-,161-,162-,163-,164-,165-,166-,167-,168-,197-,198-,199-,200-,201-,202-,203-,204-,205-,206-,207-,208-,209-,210-,211-,212-,213-,214-,215-,216-,217-,218-,219-,220-,221-/m1/s1
InChIKeyVDESFECUKTZTQC-IJPYZMFASA-N
Roles Classification
Biological Role:
epitope  The biological role played by a material entity when bound by a receptor of the adaptive immune system. Specific site on an antigen to which an antibody binds.
ChEBI Ontology
Outgoing Relation(s)
5'-CGAAAGUCCGAUCGGCGUAAUGUCA-3' RNA fragment (CHEBI:84480) has role epitope (CHEBI:53000)
5'-CGAAAGUCCGAUCGGCGUAAUGUCA-3' RNA fragment (CHEBI:84480) is a RNA fragment (CHEBI:82726)
IUPAC Name 
C-G-A-A-A-G-U-C-C-G-A-U-C-G-G-C-G-U-A-A-U-G-U-C-A
Synonym  Source
CpGpApApApGpUpCpCpGpApUpCpGpGpCpGpUpApApUpGpUpCpAChEBI
Citations