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CHEBI:78434 - 5'-AAAAATCCTTTTTGGATTAAA-3'

ChEBI IDCHEBI:78434
ChEBI Name5'-AAAAATCCTTTTTGGATTAAA-3'
Stars
DefinitionA single-stranded DNA oligonucleotide comprised of nine deoxyadenosine, eight thymidine, two deoxycytidine and two deoxyguanosine residues connected by 3'→5' phosphodiester linkages in the sequence A-A-A-A-A-T-C-C-T-T-T-T-T-G-G-A-T-T-A-A-A. Synthetic model oligodeoxyribonucleotide ligand.
Last Modified7 May 2014
SubmitterMarcus Ennis
DownloadsMolfile
FormulaC203H256N82O118P20
Net Charge0
Average Mass6352.217
Monoisotopic Mass6349.13043
SMILESCc1cn([C@H]2C[C@H](OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)C[C@@H]3O)[C@@H](COP(=O)(O)O[C@H]3C[C@H](n4cc(C)c(=O)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cc(C)c(=O)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(N)ncnc54)O[C@@H]3CO)O2)c(=O)nc1=O
InChIInChI=1S/C203H256N82O118P20/c1-83-39-272(201(300)262-187(83)288)143-27-95(117(373-143)52-353-416(327,328)396-100-32-149(279-76-244-160-171(215)226-67-235-180(160)279)378-122(100)57-358-420(335,336)400-104-36-153(283-80-248-164-175(219)230-71-239-184(164)283)380-124(104)59-359-421(337,338)401-103-35-152(282-79-247-163-174(218)229-70-238-183(163)282)379-123(103)58-357-419(333,334)398-99-31-148(278-75-243-159-170(214)225-66-234-179(159)278)375-119(99)54-344-405(305,306)384-87-19-146(363-107(87)42-286)276-73-241-157-168(212)223-64-232-177(157)276)392-413(321,322)351-50-115-93(25-141(371-115)270-16-9-133(209)256-199(270)298)390-411(317,318)349-48-113-91(23-139(369-113)268-14-7-131(207)254-197(268)296)388-409(313,314)347-46-111-89(21-137(367-111)266-12-5-129(205)252-195(266)294)386-407(309,310)345-44-109-88(20-136(365-109)265-11-4-128(204)251-194(265)293)385-406(307,308)346-45-110-90(22-138(366-110)267-13-6-130(206)253-196(267)295)387-408(311,312)348-47-112-92(24-140(368-112)269-15-8-132(208)255-198(269)297)389-410(315,316)350-49-114-94(26-142(370-114)271-17-10-134(210)257-200(271)299)391-412(319,320)361-61-126-105(37-154(382-126)284-81-249-165-185(284)258-192(220)260-190(165)291)403-423(341,342)362-62-127-106(38-155(383-127)285-82-250-166-186(285)259-193(221)261-191(166)292)402-422(339,340)360-60-125-101(33-150(381-125)280-77-245-161-172(216)227-68-236-181(161)280)397-417(329,330)354-53-118-96(28-144(374-118)273-40-84(2)188(289)263-202(273)301)393-414(323,324)352-51-116-97(29-145(372-116)274-41-85(3)189(290)264-203(274)302)394-415(325,326)355-56-121-102(34-151(377-121)281-78-246-162-173(217)228-69-237-182(162)281)399-418(331,332)356-55-120-98(30-147(376-120)277-74-242-158-169(213)224-65-233-178(158)277)395-404(303,304)343-43-108-86(287)18-135(364-108)275-72-240-156-167(211)222-63-231-176(156)275/h4-17,39-41,63-82,86-127,135-155,286-287H,18-38,42-62H2,1-3H3,(H,303,304)(H,305,306)(H,307,308)(H,309,310)(H,311,312)(H,313,314)(H,315,316)(H,317,318)(H,319,320)(H,321,322)(H,323,324)(H,325,326)(H,327,328)(H,329,330)(H,331,332)(H,333,334)(H,335,336)(H,337,338)(H,339,340)(H,341,342)(H2,204,251,293)(H2,205,252,294)(H2,206,253,295)(H2,207,254,296)(H2,208,255,297)(H2,209,256,298)(H2,210,257,299)(H2,211,222,231)(H2,212,223,232)(H2,213,224,233)(H2,214,225,234)(H2,215,226,235)(H2,216,227,236)(H2,217,228,237)(H2,218,229,238)(H2,219,230,239)(H,262,288,300)(H,263,289,301)(H,264,290,302)(H3,220,258,260,291)(H3,221,259,261,292)/t86-,87-,88-,89-,90-,91-,92-,93-,94-,95-,96-,97-,98-,99-,100-,101-,102-,103-,104-,105-,106-,107+,108+,109+,110+,111+,112+,113+,114+,115+,116+,117+,118+,119+,120+,121+,122+,123+,124+,125+,126+,127+,135+,136+,137+,138+,139+,140+,141+,142+,143+,144+,145+,146+,147+,148+,149+,150+,151+,152+,153+,154+,155+/m0/s1
InChIKeyHVQYPBWLGSXGBX-DQDNKNLRSA-N
ChEBI Ontology
Outgoing Relation(s)
5'-AAAAATCCTTTTTGGATTAAA-3' (CHEBI:78434) is a single-stranded DNA oligonucleotide (CHEBI:75153)
Synonyms  Source
d(A-A-A-A-A-T-C-C-T-T-T-T-T-G-G-A-T-T-A-A-A)ChEBI
5'-ApApApApApTpCpCpTpTpTpTpTpGpGpApTpTpApApA-3'ChEBI
5'-d[AAAAATCCTTTTTGGATTAAA]-3'ChEBI
d(AAAAATCCTTTTTGGATTAAA)ChEBI
Citations