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CHEBI:76482 - 5'-CGTGCTGTTTTTTTTTG-3'

ChEBI IDCHEBI:76482
ChEBI Name5'-CGTGCTGTTTTTTTTTG-3'
Stars
DefinitionA single-stranded DNA oligonucleotide consisting of four deoxyguanosine, two deoxycytidine and eleven thymidine residues connected by 3'→5' phosphodiester linkages in the sequence C-G-T-G-C-T-G-T-T-T-T-T-T-T-T-T-G.
Last Modified28 April 2017
SubmitterMarcus Ennis
DownloadsMolfile
FormulaC168H217N48O114P17
Net Charge0
Average Mass5259.364
Monoisotopic Mass5256.81980
SMILESCc1cn([C@H]2C[C@H](OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cc(C)c(=O)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cc(C)c(=O)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cc(C)c(=O)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cc(C)c(=O)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cc(C)c(=O)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cc(C)c(=O)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cc(C)c(=O)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cc(C)c(=O)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cc(C)c(=O)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)O)[C@@H](COP(=O)(O)O[C@H]3C[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cc(C)c(=O)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4ccc(N)nc4=O)O[C@@H]3CO)O2)c(=O)nc1=O
InChIInChI=1S/C168H217N48O114P17/c1-65-33-202(158(235)189-137(65)218)114-19-79(317-333(251,252)281-45-94-77(314-331(246,247)248)17-125(310-94)213-61-175-129-133(213)181-152(171)185-148(129)229)97(300-114)48-285-335(255,256)318-80-20-115(203-34-66(2)138(219)190-159(203)236)301-98(80)49-286-336(257,258)319-81-21-116(204-35-67(3)139(220)191-160(204)237)302-99(81)50-287-337(259,260)320-82-22-117(205-36-68(4)140(221)192-161(205)238)303-100(82)51-288-338(261,262)321-83-23-118(206-37-69(5)141(222)193-162(206)239)304-101(83)52-289-339(263,264)322-84-24-119(207-38-70(6)142(223)194-163(207)240)305-102(84)53-290-340(265,266)323-85-25-120(208-39-71(7)143(224)195-164(208)241)306-103(85)54-291-341(267,268)324-86-26-121(209-40-72(8)144(225)196-165(209)242)307-104(86)55-292-342(269,270)325-87-27-122(210-41-73(9)145(226)197-166(210)243)308-105(87)56-294-347(279,280)330-92-32-128(216-64-178-132-136(216)184-155(174)188-151(132)232)313-109(92)60-296-343(271,272)326-88-28-123(211-42-74(10)146(227)198-167(211)244)299-96(88)47-284-334(253,254)316-78-18-113(201-15-13-111(170)180-157(201)234)298-95(78)46-283-345(275,276)328-91-31-127(215-63-177-131-135(215)183-154(173)187-150(131)231)312-108(91)59-295-344(273,274)327-89-29-124(212-43-75(11)147(228)199-168(212)245)309-106(89)57-293-346(277,278)329-90-30-126(214-62-176-130-134(214)182-153(172)186-149(130)230)311-107(90)58-282-332(249,250)315-76-16-112(297-93(76)44-217)200-14-12-110(169)179-156(200)233/h12-15,33-43,61-64,76-109,112-128,217H,16-32,44-60H2,1-11H3,(H,249,250)(H,251,252)(H,253,254)(H,255,256)(H,257,258)(H,259,260)(H,261,262)(H,263,264)(H,265,266)(H,267,268)(H,269,270)(H,271,272)(H,273,274)(H,275,276)(H,277,278)(H,279,280)(H2,169,179,233)(H2,170,180,234)(H,189,218,235)(H,190,219,236)(H,191,220,237)(H,192,221,238)(H,193,222,239)(H,194,223,240)(H,195,224,241)(H,196,225,242)(H,197,226,243)(H,198,227,244)(H,199,228,245)(H2,246,247,248)(H3,171,181,185,229)(H3,172,182,186,230)(H3,173,183,187,231)(H3,174,184,188,232)/t76-,77-,78-,79-,80-,81-,82-,83-,84-,85-,86-,87-,88-,89-,90-,91-,92-,93+,94+,95+,96+,97+,98+,99+,100+,101+,102+,103+,104+,105+,106+,107+,108+,109+,112+,113+,114+,115+,116+,117+,118+,119+,120+,121+,122+,123+,124+,125+,126+,127+,128+/m0/s1
InChIKeyUIDJMVVJEYNREQ-ZEXKEQAZSA-N
Roles Classification
Biological Role:
epitope  The biological role played by a material entity when bound by a receptor of the adaptive immune system. Specific site on an antigen to which an antibody binds.
ChEBI Ontology
Outgoing Relation(s)
5'-CGTGCTGTTTTTTTTTG-3' (CHEBI:76482) has role epitope (CHEBI:53000)
5'-CGTGCTGTTTTTTTTTG-3' (CHEBI:76482) is a single-stranded DNA oligonucleotide (CHEBI:75153)
Synonyms  Source
d(C-G-T-G-C-T-G-T-T-T-T-T-T-T-T-T-G)ChEBI
d(CGTGCTGTTTTTTTTTG)ChEBI
5'-CpGpTpGpCpTpGpTpTpTpTpTpTpTpTpTpG-3'ChEBI
5'-d[CGTGCTGTTTTTTTTTG]-3'ChEBI
Citations