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CHEBI:76113 - 5'-AATTCAA-3'

ChEBI IDCHEBI:76113
ChEBI Name5'-AATTCAA-3'
Stars
DefinitionA single-stranded DNA oligonucleotide comprised of four deoxyadenosine, two thymidine residues and one deoxycytidine residue connected by 3'→5' phosphodiester linkages in the sequence AATTCAA.
Last Modified20 November 2013
SubmitterMarcus Ennis
DownloadsMolfile
FormulaC70H88N26O38P6
Net Charge0
Average Mass2087.462
Monoisotopic Mass2086.41785
SMILESCc1cn([C@H]2C[C@H](OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)cc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)C[C@@H]3O)[C@@H](COP(=O)(O)O[C@H]3C[C@H](n4cc(C)c(=O)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(N)ncnc54)O[C@@H]3CO)O2)c(=O)nc1=O
InChIInChI=1S/C70H88N26O38P6/c1-30-13-91(69(102)88-67(30)100)50-9-36(131-138(110,111)118-17-42-35(8-49(124-42)90-4-3-32(71)5-47(90)99)130-137(108,109)121-21-46-38(11-53(128-46)95-28-86-57-61(74)78-24-82-65(57)95)133-135(104,105)116-16-41-33(98)6-48(123-41)93-26-84-55-59(72)76-22-80-63(55)93)43(125-50)18-119-139(112,113)132-37-10-51(92-14-31(2)68(101)89-70(92)103)126-44(37)19-120-140(114,115)134-39-12-54(96-29-87-58-62(75)79-25-83-66(58)96)127-45(39)20-117-136(106,107)129-34-7-52(122-40(34)15-97)94-27-85-56-60(73)77-23-81-64(56)94/h3-5,13-14,22-29,33-46,48-54,97-98H,6-12,15-21,71H2,1-2H3,(H,104,105)(H,106,107)(H,108,109)(H,110,111)(H,112,113)(H,114,115)(H2,72,76,80)(H2,73,77,81)(H2,74,78,82)(H2,75,79,83)(H,88,100,102)(H,89,101,103)/t33-,34-,35-,36-,37-,38-,39-,40+,41+,42+,43+,44+,45+,46+,48+,49+,50+,51+,52+,53+,54+/m0/s1
InChIKeyRNDHCFGAJQKNIE-FRVGJWFHSA-N
ChEBI Ontology
Outgoing Relation(s)
5'-AATTCAA-3' (CHEBI:76113) is a single-stranded DNA oligonucleotide (CHEBI:75153)
Synonyms  Source
5'-d[AATTCAA]-3'ChEBI
5'-ApApTpTpCpApA-3'ChEBI
d(A-A-T-T-C-A-A)ChEBI
d(AATTCAA)ChEBI
Citations