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CHEBI:76059 - d(CG)12

ChEBI IDCHEBI:76059
ChEBI Named(CG)12
Stars
ASCII Named(CG)12
DefinitionA 24-residue single-stranded DNA oligonucleotide consisting of an alternating sequence of deoxycytidine and deoxyguanosine residues, all connected by 3'→5' phosphodiester linkages. It forms one strand of the double-stranded DNA oligonucleotide [d(C-G)·d(C-G)]12 [synonym d(CG/GC)12].
Last Modified24 October 2013
SubmitterMarcus Ennis
DownloadsMolfile
FormulaC228H289N96O142P23
Net Charge0
Average Mass7358.752
Monoisotopic Mass7355.23093
SMILESNc1ccn([C@H]2C[C@H](OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3O)[C@@H](CO)O2)c(=O)n1
InChIInChI=1S/C228H289N96O142P23/c229-133-1-13-301(217(339)265-133)146-26-86(109(49-325)420-146)444-468(353,354)398-62-122-98(38-158(433-122)314-74-254-170-182(314)278-206(242)290-194(170)328)456-480(377,378)400-52-112-88(28-148(423-112)303-15-3-135(231)267-219(303)341)446-470(357,358)411-64-124-100(40-160(435-124)316-76-256-172-184(316)280-208(244)292-196(172)330)458-482(381,382)402-54-114-90(30-150(425-114)305-17-5-137(233)269-221(305)343)448-472(361,362)413-66-126-102(42-162(437-126)318-78-258-174-186(318)282-210(246)294-198(174)332)460-484(385,386)404-56-116-92(32-152(427-116)307-19-7-139(235)271-223(307)345)450-474(365,366)415-68-128-104(44-164(439-128)320-80-260-176-188(320)284-212(248)296-200(176)334)462-486(389,390)406-58-118-94(34-154(429-118)309-21-9-141(237)273-225(309)347)452-476(369,370)417-70-130-106(46-166(441-130)322-82-262-178-190(322)286-214(250)298-202(178)336)464-488(393,394)408-60-120-96(36-156(431-120)311-23-11-143(239)275-227(311)349)454-478(373,374)419-72-132-108(48-168(443-132)324-84-264-180-192(324)288-216(252)300-204(180)338)466-489(395,396)409-61-121-97(37-157(432-121)312-24-12-144(240)276-228(312)350)455-477(371,372)418-71-131-107(47-167(442-131)323-83-263-179-191(323)287-215(251)299-203(179)337)465-487(391,392)407-59-119-95(35-155(430-119)310-22-10-142(238)274-226(310)348)453-475(367,368)416-69-129-105(45-165(440-129)321-81-261-177-189(321)285-213(249)297-201(177)335)463-485(387,388)405-57-117-93(33-153(428-117)308-20-8-140(236)272-224(308)346)451-473(363,364)414-67-127-103(43-163(438-127)319-79-259-175-187(319)283-211(247)295-199(175)333)461-483(383,384)403-55-115-91(31-151(426-115)306-18-6-138(234)270-222(306)344)449-471(359,360)412-65-125-101(41-161(436-125)317-77-257-173-185(317)281-209(245)293-197(173)331)459-481(379,380)401-53-113-89(29-149(424-113)304-16-4-136(232)268-220(304)342)447-469(355,356)410-63-123-99(39-159(434-123)315-75-255-171-183(315)279-207(243)291-195(171)329)457-479(375,376)399-51-111-87(27-147(422-111)302-14-2-134(230)266-218(302)340)445-467(351,352)397-50-110-85(326)25-145(421-110)313-73-253-169-181(313)277-205(241)289-193(169)327/h1-24,73-132,145-168,325-326H,25-72H2,(H,351,352)(H,353,354)(H,355,356)(H,357,358)(H,359,360)(H,361,362)(H,363,364)(H,365,366)(H,367,368)(H,369,370)(H,371,372)(H,373,374)(H,375,376)(H,377,378)(H,379,380)(H,381,382)(H,383,384)(H,385,386)(H,387,388)(H,389,390)(H,391,392)(H,393,394)(H,395,396)(H2,229,265,339)(H2,230,266,340)(H2,231,267,341)(H2,232,268,342)(H2,233,269,343)(H2,234,270,344)(H2,235,271,345)(H2,236,272,346)(H2,237,273,347)(H2,238,274,348)(H2,239,275,349)(H2,240,276,350)(H3,241,277,289,327)(H3,242,278,290,328)(H3,243,279,291,329)(H3,244,280,292,330)(H3,245,281,293,331)(H3,246,282,294,332)(H3,247,283,295,333)(H3,248,284,296,334)(H3,249,285,297,335)(H3,250,286,298,336)(H3,251,287,299,337)(H3,252,288,300,338)/t85-,86-,87-,88-,89-,90-,91-,92-,93-,94-,95-,96-,97-,98-,99-,100-,101-,102-,103-,104-,105-,106-,107-,108-,109+,110+,111+,112+,113+,114+,115+,116+,117+,118+,119+,120+,121+,122+,123+,124+,125+,126+,127+,128+,129+,130+,131+,132+,145+,146+,147+,148+,149+,150+,151+,152+,153+,154+,155+,156+,157+,158+,159+,160+,161+,162+,163+,164+,165+,166+,167+,168+/m0/s1
InChIKeyVUIKXKJIWVOSMF-GHTOIXBYSA-N
ChEBI Ontology
Outgoing Relation(s)
d(CG)12 (CHEBI:76059) is a single-stranded DNA oligonucleotide (CHEBI:75153)
Synonyms  Source
5'-CpG-3'ChEBI
d(C-G)12ChEBI
d(5'-CGCGCGCGCGCGCGCGCGCGCGCG-3')ChEBI
Citations