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CHEBI:75944 - 5'-TCAACC-3'

ChEBI IDCHEBI:75944
ChEBI Name5'-TCAACC-3'
Stars
DefinitionA single-stranded DNA oligonucleotide comprised of two deoxyadenosine, one thymidine and three deoxycytidine residues connected by 3'→5' phosphodiester linkages in the sequence TCAACC.
Last Modified20 November 2013
SubmitterMarcus Ennis
DownloadsMolfile
FormulaC57H74N21O33P5
Net Charge0
Average Mass1736.203
Monoisotopic Mass1735.34460
SMILESCc1cn([C@H]2C[C@H](OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4ccc(N)nc4=O)C[C@@H]3O)[C@@H](CO)O2)c(=O)nc1=O
InChIInChI=1S/C57H74N21O33P5/c1-25-14-76(57(85)72-53(25)81)44-9-27(32(15-79)101-44)107-113(88,89)97-17-34-29(11-43(103-34)75-7-4-40(60)71-56(75)84)109-114(90,91)99-19-36-31(13-46(105-36)78-24-68-48-50(62)64-22-66-52(48)78)111-116(94,95)100-20-37-30(12-45(106-37)77-23-67-47-49(61)63-21-65-51(47)77)110-115(92,93)98-18-35-28(10-42(104-35)74-6-3-39(59)70-55(74)83)108-112(86,87)96-16-33-26(80)8-41(102-33)73-5-2-38(58)69-54(73)82/h2-7,14,21-24,26-37,41-46,79-80H,8-13,15-20H2,1H3,(H,86,87)(H,88,89)(H,90,91)(H,92,93)(H,94,95)(H2,58,69,82)(H2,59,70,83)(H2,60,71,84)(H2,61,63,65)(H2,62,64,66)(H,72,81,85)/t26-,27-,28-,29-,30-,31-,32+,33+,34+,35+,36+,37+,41+,42+,43+,44+,45+,46+/m0/s1
InChIKeyNPHJVYOLEPLOMR-KLKNIUQISA-N
Roles Classification
Biological Role:
antigen  Any substance that stimulates an immune response in the body, such as through antibody production or by presentation to a T-cell receptor after binding to a major histocompability complex (MHC).
ChEBI Ontology
Outgoing Relation(s)
5'-TCAACC-3' (CHEBI:75944) has role antigen (CHEBI:59132)
5'-TCAACC-3' (CHEBI:75944) is a single-stranded DNA oligonucleotide (CHEBI:75153)
Synonyms  Source
5'-d[TCAACC]-3'ChEBI
d(T-C-A-A-C-C)ChEBI
5'-TpCpApApCpC-3'ChEBI
d(TCAACC)ChEBI
Citations