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CHEBI:75911 - 5'-GCAG-3'

ChEBI IDCHEBI:75911
ChEBI Name5'-GCAG-3'
Stars
DefinitionA single-stranded DNA oligonucleotide comprised of one deoxycytidine, one deoxyadenosine and two deoxyguanosine residues connected by 3'→5' phosphodiester linkages in the sequence GCAG.
Last Modified20 November 2013
SubmitterMarcus Ennis
DownloadsMolfile
FormulaC39H49N18O21P3
Net Charge0
Average Mass1198.848
Monoisotopic Mass1198.25325
SMILESNc1ccn([C@H]2C[C@H](OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(N)ncnc54)C[C@@H]3OP(=O)(O)OC[C@H]3O[C@@H](n4cnc5c(=O)nc(N)nc54)C[C@@H]3O)[C@@H](COP(=O)(O)O[C@H]3C[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3CO)O2)c(=O)n1
InChIInChI=1S/C39H49N18O21P3/c40-23-1-2-54(39(62)49-23)25-5-17(21(74-25)9-70-80(65,66)76-16-4-27(72-19(16)7-58)57-14-48-30-34(57)51-38(43)53-36(30)61)77-81(67,68)71-10-22-18(6-26(75-22)55-12-46-28-31(41)44-11-45-32(28)55)78-79(63,64)69-8-20-15(59)3-24(73-20)56-13-47-29-33(56)50-37(42)52-35(29)60/h1-2,11-22,24-27,58-59H,3-10H2,(H,63,64)(H,65,66)(H,67,68)(H2,40,49,62)(H2,41,44,45)(H3,42,50,52,60)(H3,43,51,53,61)/t15-,16-,17-,18-,19+,20+,21+,22+,24+,25+,26+,27+/m0/s1
InChIKeyXUVPOXDPZPEOEL-HJFLAXLTSA-N
ChEBI Ontology
Outgoing Relation(s)
5'-GCAG-3' (CHEBI:75911) is a single-stranded DNA oligonucleotide (CHEBI:75153)
Incoming Relation(s)
5'-CTGC-3' dsDNA oligonucleotide (CHEBI:75908) has part 5'-GCAG-3' (CHEBI:75911)
Synonyms  Source
3'-GACG-5'ChEBI
d(5'-GCAG-3')ChEBI
Citations