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CHEBI:140073 - 5'-GAGAGACCCAC-3' RNA fragment

ChEBI IDCHEBI:140073
ChEBI Name5'-GAGAGACCCAC-3' RNA fragment
Stars
DefinitionAn RNA fragment comprised of three guanosine, two adenosine and four cytidine residues connected by 3'→5' phosphodiester linkages in the sequence G-A-G-A-G-A-C-C-C-A-C.
Last Modified9 February 2018
SubmitterMarcus Ennis
DownloadsMolfile
FormulaC106H133N47O71P10
Net Charge0
Average Mass3511.228
Monoisotopic Mass3509.56176
SMILESNc1ccn([C@@H]2O[C@H](COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4ccc(N)nc4=O)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(N)ncnc54)O[C@@H]3COP(=O)(O)O[C@H]3[C@@H](O)[C@H](n4cnc5c(=O)nc(N)nc54)O[C@@H]3CO)[C@@H](O)[C@H]2O)c(=O)n1
InChIInChI=1S/C106H133N47O71P10/c107-42-1-5-143(103(170)133-42)89-54(156)53(155)32(205-89)10-194-225(174,175)219-69-37(210-93(59(69)161)147-24-126-46-75(111)118-20-122-79(46)147)15-199-229(182,183)218-68-34(207-92(58(68)160)146-8-4-45(110)136-106(146)173)12-197-227(178,179)216-66-33(206-90(56(66)158)144-6-2-43(108)134-104(144)171)11-196-228(180,181)217-67-35(208-91(57(67)159)145-7-3-44(109)135-105(145)172)13-198-230(184,185)220-71-38(211-95(61(71)163)149-26-128-48-77(113)120-22-124-81(48)149)16-200-233(190,191)223-74-41(214-99(64(74)166)153-30-132-52-85(153)139-102(117)142-88(52)169)19-203-232(188,189)222-72-39(212-96(62(72)164)150-27-129-49-78(114)121-23-125-82(49)150)17-201-234(192,193)224-73-40(213-98(63(73)165)152-29-131-51-84(152)138-101(116)141-87(51)168)18-202-231(186,187)221-70-36(209-94(60(70)162)148-25-127-47-76(112)119-21-123-80(47)148)14-195-226(176,177)215-65-31(9-154)204-97(55(65)157)151-28-130-50-83(151)137-100(115)140-86(50)167/h1-8,20-41,53-74,89-99,154-166H,9-19H2,(H,174,175)(H,176,177)(H,178,179)(H,180,181)(H,182,183)(H,184,185)(H,186,187)(H,188,189)(H,190,191)(H,192,193)(H2,107,133,170)(H2,108,134,171)(H2,109,135,172)(H2,110,136,173)(H2,111,118,122)(H2,112,119,123)(H2,113,120,124)(H2,114,121,125)(H3,115,137,140,167)(H3,116,138,141,168)(H3,117,139,142,169)/t31-,32-,33-,34-,35-,36-,37-,38-,39-,40-,41-,53-,54-,55-,56-,57-,58-,59-,60-,61-,62-,63-,64-,65-,66-,67-,68-,69-,70-,71-,72-,73-,74-,89-,90-,91-,92-,93-,94-,95-,96-,97-,98-,99-/m1/s1
InChIKeyWSRANCDKIKOWNN-AZNVTYRDSA-N
ChEBI Ontology
Outgoing Relation(s)
5'-GAGAGACCCAC-3' RNA fragment (CHEBI:140073) is a RNA fragment (CHEBI:82726)
IUPAC Name 
G-A-G-A-G-A-C-C-C-A-C
Synonym  Source
GpApGpApGpApCpCpCpApCChEBI
Citations