 |
PDBsum entry 5l4k
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Structural protein
|
PDB id
|
|
|
|
5l4k
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Contents |
 |
|
|
|
|
|
|
|
|
|
|
|
196 a.a.
|
|
|
|
|
|
|
|
|
|
|
293 a.a.
|
|
|
|
|
|
|
|
|
|
|
272 a.a.
|
|
|
|
|
|
|
|
|
|
|
56 a.a.
|
|
|
|
|
|
|
|
|
|
|
881 a.a.
|
|
|
|
|
|
|
|
|
|
|
876 a.a.
|
|
|
|
|
|
|
|
|
|
|
491 a.a.
|
|
|
|
|
|
|
|
|
|
|
456 a.a.
|
|
|
|
|
|
|
|
|
|
|
422 a.a.
|
|
|
|
|
|
|
|
|
|
|
389 a.a.
|
|
|
|
|
|
|
|
|
|
|
292 a.a.
|
|
|
|
|
|
|
|
|
|
|
376 a.a.
|
|
|
|
|
|
|
|
|
|
Generate full PROCHECK analyses
|
PROCHECK summary for 5l4k
Ramachandran plot
PROCHECK statistics
1. Ramachandran Plot statistics
No. of
residues %-tage
------ ------
Most favoured regions [A,B,L] 3746 82.4%*
Additional allowed regions [a,b,l,p] 684 15.0%
Generously allowed regions [~a,~b,~l,~p] 81 1.8%
Disallowed regions [XX] 35 0.8%*
---- ------
Non-glycine and non-proline residues 4546 100.0%
End-residues (excl. Gly and Pro) 24
Glycine residues 264
Proline residues 166
----
Total number of residues 5000
Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good
quality model would be expected to have over 90% in the most favoured regions [A,B,L].
2. G-Factors
Average
Parameter Score Score
--------- ----- -----
Dihedral angles:-
Phi-psi distribution -0.58*
Chi1-chi2 distribution -0.24
Chi1 only -0.06
Chi3 & chi4 0.42
Omega -0.77*
-0.42
=====
Main-chain covalent forces:-
Main-chain bond lengths 0.60
Main-chain bond angles 0.39
0.48
=====
OVERALL AVERAGE -0.07
=====
G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.
Values below -0.5* - unusual
Values below -1.0** - highly unusual
Important note: The main-chain
bond-lengths and bond angles are compared with
the Engh & Huber (1991) ideal values derived
from small-molecule data. Therefore, structures
refined using different restraints may show
apparently large deviations from normality.
|
|
|
