PDBsum entry 4rut Go to PDB code:  Pore analysis for: 4rut calculated with MOLE 2.0 PDB id 4rut Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   34 pores, coloured by radius 38 pores, coloured by radius 38 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.23 27.6 -1.16 -0.29 10.0 83 1 5 3 2 1 1 0   2 1.68 1.74 28.6 -1.26 -0.43 10.7 76 1 4 5 2 1 1 2   3 1.19 1.23 29.3 -0.94 -0.31 8.8 84 1 3 3 2 1 1 0   4 1.22 1.23 32.8 -1.02 -0.40 10.0 78 1 4 4 2 3 2 0   5 1.59 1.59 38.3 -1.05 -0.36 9.2 76 3 4 6 3 3 1 2   6 1.20 1.23 40.0 -1.34 -0.41 14.0 82 2 3 4 3 1 1 0   7 4.21 4.35 40.4 -2.04 -0.35 21.4 72 5 4 3 1 4 0 1   8 3.69 3.68 43.0 -2.36 -0.46 24.3 72 5 3 3 1 3 0 1   9 2.39 3.03 43.6 -2.53 -0.47 26.9 79 8 7 4 0 2 0 1   10 1.50 1.52 45.1 -1.10 -0.43 11.3 76 3 3 5 2 2 1 2   11 3.62 4.45 45.6 -2.31 -0.57 27.0 73 5 4 3 2 3 0 1   12 2.39 2.88 46.2 -2.89 -0.62 34.2 79 7 5 6 1 2 1 0   13 1.36 1.68 50.9 0.77 0.23 3.3 80 2 0 6 10 8 1 0  LM8 706 B 14 1.25 1.32 51.6 -1.09 -0.38 11.9 76 4 5 5 3 4 2 1   15 3.17 4.44 52.4 -1.34 -0.38 17.4 79 6 4 2 4 2 0 0   16 1.66 1.66 53.2 -1.98 -0.43 8.2 69 4 0 4 1 3 2 0   17 2.82 3.22 54.2 -0.48 -0.17 18.5 78 7 3 1 4 1 0 0   18 1.39 1.82 66.6 1.03 0.21 3.3 77 2 1 6 10 7 1 0  LM8 706 A NAG 1 F 19 1.20 1.23 68.4 -0.65 -0.26 15.6 83 5 4 4 6 1 1 0   20 1.38 1.68 75.1 0.38 0.09 7.0 80 5 1 9 12 7 1 0  LM8 706 B NAG 1 F 21 1.88 2.16 108.2 -1.24 -0.16 15.6 79 5 2 4 2 3 1 0   22 1.60 1.62 126.5 -1.23 -0.37 13.4 77 4 5 5 4 2 2 2   23 2.82 3.14 26.2 -0.74 -0.14 10.8 77 4 0 4 2 2 1 0   24 1.19 1.23 26.8 -0.87 -0.31 7.7 86 1 3 3 2 1 0 0   25 1.26 1.74 30.1 -1.65 -0.50 18.4 77 3 4 4 2 2 0 0  NAG 1 H 26 1.68 1.74 32.0 -0.89 -0.41 7.7 76 2 2 4 2 1 1 2   27 1.25 4.52 35.0 -2.30 -0.24 30.8 75 4 3 3 1 3 0 0   28 1.26 1.73 35.8 -1.44 -0.45 16.5 80 3 3 5 3 2 0 0  NAG 1 G 29 1.18 1.26 36.2 -1.19 -0.48 9.4 75 4 2 4 3 1 2 1   30 1.50 1.51 38.1 -1.00 -0.45 9.9 77 4 3 5 2 2 1 2   31 1.61 1.60 42.0 -2.10 -0.62 9.1 71 4 1 5 2 2 2 0   32 1.17 1.29 47.7 -1.57 -0.36 15.0 74 4 3 4 3 2 3 0   33 1.24 1.77 53.3 -1.05 -0.31 14.1 75 3 4 10 6 4 0 0  NAG 1 G NAG 1 H 34 1.32 1.53 72.9 -1.48 -0.45 7.0 71 3 3 8 3 4 3 2   35 1.16 1.20 73.3 -1.36 -0.35 18.6 87 3 3 5 4 1 1 0   36 1.22 1.23 91.6 -1.30 -0.41 17.3 80 7 5 7 4 3 2 1   37 1.25 1.82 92.3 -0.31 -0.12 8.8 79 7 3 9 8 7 1 0  LM8 706 D 38 2.25 2.59 117.5 -2.23 -0.36 23.3 78 8 3 6 2 4 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.