PDBsum entry 4rut Go to PDB code:  Tunnel analysis for: 4rut calculated with MOLE 2.0 PDB id 4rut Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.44 98.7 -1.13 -0.34 16.3 70 4 7 5 8 5 3 2   2 1.25 1.26 148.5 -1.20 -0.28 12.6 70 8 7 9 9 10 4 2   3 1.29 1.60 21.4 -0.97 -0.22 16.0 76 2 2 1 3 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.