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PDBsum entry 4pfp

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4pfp calculated with MOLE 2.0 PDB id
4pfp
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.89 2.15 25.9 -2.02 -0.69 21.4 91 4 3 4 1 0 0 0  
2 2.20 2.83 28.7 -1.44 -0.31 24.8 77 5 4 1 2 1 0 0  
3 1.64 1.64 82.0 -2.21 -0.65 24.7 85 8 8 6 4 0 0 0  
4 1.84 2.31 85.1 -1.22 -0.34 18.2 80 7 7 8 9 2 2 0  ADP 801 C
5 1.87 2.43 106.0 -1.62 -0.41 25.3 81 14 10 4 6 2 1 0  ADP 801 C
6 1.96 2.10 112.6 -1.41 -0.41 19.7 83 11 10 10 9 2 1 0  
7 1.88 2.13 125.8 -1.59 -0.37 21.4 83 11 10 8 6 1 0 1  
8 1.18 1.19 136.3 -1.52 -0.35 19.7 84 9 9 11 8 1 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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