PDBsum entry 4pfp Go to PDB code:  Tunnel analysis for: 4pfp calculated with MOLE 2.0 PDB id 4pfp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 3.53 42.5 0.87 0.38 12.7 72 4 3 1 9 2 0 1   2 1.21 3.47 47.4 0.31 0.16 13.7 74 5 3 2 11 3 0 1   3 1.21 3.41 55.0 0.52 0.22 14.5 75 5 2 1 10 3 0 1   4 1.19 3.53 59.1 -0.33 -0.08 13.8 78 6 6 6 10 3 0 1  ADP 801 C PO4 802 C MG 803 C 5 1.45 1.61 17.4 -0.89 -0.27 15.3 77 2 1 2 4 1 1 0   6 1.46 1.61 23.5 -0.86 -0.20 16.9 76 4 1 2 4 1 1 0   7 1.44 1.59 24.4 -0.97 -0.35 12.7 75 2 1 2 3 2 2 0   8 1.43 1.58 25.8 -1.48 -0.12 23.1 79 3 2 2 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.