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PDBsum entry 2imw

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 2imw calculated with MOLE 2.0 PDB id
2imw
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.45 2.03 23.3 1.76 0.76 10.3 90 2 0 1 5 0 0 0  DG 1801 S DG 1802 S DG 1803 S DC 1917 T
2 1.30 1.29 28.7 0.38 0.13 12.9 93 4 0 0 5 0 0 0  EDO 506 P DG 1801 S DG 1802 S DG 1803 S
3 1.42 2.07 30.6 -1.33 -0.23 25.2 85 3 0 0 2 0 0 0  EDO 504 P DG 1803 S DG 1805 S DA 1806 S DA 1807 S
DT 1909 T DC 1910 T DC 1911 T DT 1912 T DT 1913 T
DC 1914 T
4 1.42 2.09 35.9 -1.65 -0.23 28.6 89 3 0 0 2 0 0 0  EDO 504 P DG 1803 S DG 1805 S DA 1806 S DC 1910 T
DC 1911 T DT 1912 T DT 1913 T DC 1914 T
5 1.14 2.53 15.1 -1.34 -0.39 17.6 90 1 1 3 1 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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