PDBsum entry 1y1u Go to PDB code:  Pore analysis for: 1y1u calculated with MOLE 2.0 PDB id 1y1u Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.47 1.65 26.5 -2.81 -0.61 27.9 80 5 2 4 0 0 1 0   2 3.32 4.01 27.5 -2.96 -0.76 36.3 80 2 6 2 1 0 1 0   3 1.27 1.38 29.7 -1.44 -0.30 20.6 80 4 1 4 2 0 0 1   4 1.67 1.91 50.1 -2.05 -0.55 19.1 85 6 3 5 1 1 1 0   5 1.41 1.55 83.3 -1.99 -0.29 22.3 81 10 8 13 4 2 1 1   6 1.37 1.65 86.0 -0.75 -0.23 12.3 89 5 4 10 7 1 0 0   7 1.35 1.59 104.6 -1.11 -0.30 12.6 84 6 6 12 7 2 1 0   8 1.53 1.53 172.9 -1.95 -0.37 20.9 82 15 10 16 9 3 2 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.