PDBsum entry 1y1u Go to PDB code:  Tunnel analysis for: 1y1u calculated with MOLE 2.0 PDB id 1y1u Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 1.38 34.5 0.88 0.31 12.4 80 5 0 3 10 0 0 0   2 1.20 1.38 38.4 0.79 0.20 9.9 77 5 1 2 10 0 0 1   3 1.20 1.38 40.1 0.58 0.16 9.4 82 4 1 6 12 0 0 1   4 1.21 1.38 44.6 -0.20 -0.01 16.5 79 4 2 5 10 0 1 0   5 1.20 1.20 18.0 1.50 0.51 2.8 74 1 0 2 4 1 1 0   6 1.19 1.39 24.1 1.20 0.35 9.7 78 4 0 2 9 0 0 0   7 1.16 1.16 17.9 1.24 0.46 5.3 74 1 0 2 4 1 1 0   8 1.16 1.16 18.8 1.77 0.71 5.9 69 1 0 0 4 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.