spacer
spacer

PDBsum entry 1y1u

Go to PDB code: 
protein Protein-protein interface(s) links
Signaling protein PDB id
1y1u

 

 

 

 

Loading ...

 
JSmol PyMol  
Contents
Protein chains
544 a.a. *
* Residue conservation analysis
PDB id:
1y1u
Name: Signaling protein
Title: Structure of unphosphorylated stat5a
Structure: Signal transducer and activator of transcription 5a. Chain: a, b, c. Fragment: stat5a core fragment. Synonym: stat5a, mammary gland factor. Engineered: yes
Source: Mus musculus. House mouse. Organism_taxid: 10090. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Resolution:
3.21Å     R-factor:   0.269     R-free:   0.299
Authors: D.Neculai,A.M.Neculai,S.Verrier,K.Straub,K.Klumpp,E.Pfitzner,S.Becker
Key ref:
D.Neculai et al. (2005). Structure of the unphosphorylated STAT5a dimer. J Biol Chem, 280, 40782-40787. PubMed id: 16192273 DOI: 10.1074/jbc.M507682200
Date:
19-Nov-04     Release date:   04-Oct-05    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P42230  (STA5A_MOUSE) -  Signal transducer and activator of transcription 5A from Mus musculus
Seq:
Struc:
 
Seq:
Struc:
793 a.a.
544 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
DOI no: 10.1074/jbc.M507682200 J Biol Chem 280:40782-40787 (2005)
PubMed id: 16192273  
 
 
Structure of the unphosphorylated STAT5a dimer.
D.Neculai, A.M.Neculai, S.Verrier, K.Straub, K.Klumpp, E.Pfitzner, S.Becker.
 
  ABSTRACT  
 
STAT proteins have the function of signaling from the cell membrane into the nucleus, where they regulate gene transcription. Latent mammalian STAT proteins can form dimers in the cytoplasm even before receptor-mediated activation by specific tyrosine phosphorylation. Here we describe the 3.21-A crystal structure of an unphosphorylated STAT5a homodimer lacking the N-terminal domain as well as the C-terminal transactivation domain. The overall structure of this fragment is very similar to phosphorylated STATs. However, important differences exist in the dimerization mode. Although the interface between phosphorylated STATs is mediated by their Src-homology 2 domains, the unphosphorylated STAT5a fragment dimerizes in a completely different manner via interactions between their beta-barrel and four-helix bundle domains. The STAT4 N-terminal domain dimer can be docked onto this STAT5a core fragment dimer based on shape and charge complementarities. The separation of the dimeric arrangement, taking place upon activation and nuclear translocation of STAT5a, is demonstrated by fluorescence resonance energy transfer experiments in living cells.
 
  Selected figure(s)  
 
Figure 2.
FIGURE 2. The quality of the electron density allows the identification of intermolecular contacts in the Stat5a dimer. A, 2 mF[o] - DF[c] electron density map contoured at 2 level around the 2-fold axis of the dimer. B, the residues involved in the interactions at the interface are colored according to each monomer after the color coding from Fig. 1B. For clarity only some of them have been labeled. Hydrogen bonds are represented as dashed lines.
Figure 3.
FIGURE 3. Docking model of the N-terminal domain dimer structure of STAT4 onto the dimeric STAT5a core fragment assuming coincidence of their dyads. A, side view of the ensemble. An arrow indicates the dyad. Dashed lines symbolize the missing residues between the C termini of the N-terminal domains and the N termini of the core domains. The color coding for the STAT5a dimer is identical to the one used in Fig. 1A, and the N-terminal domain dimer is colored in cyan. B, electrostatic potential representations of matched surfaces of the docking partners. The common 2-fold axis is indicated by an X, and the complementary surfaces are encircled.
 
  The above figures are reprinted by permission from the ASBMB: J Biol Chem (2005, 280, 40782-40787) copyright 2005.  
  Figures were selected by the author.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
20962278 L.Ma, J.S.Gao, Y.Guan, X.Shi, H.Zhang, M.K.Ayrapetov, Z.Zhang, L.Xu, Y.M.Hyun, M.Kim, S.Zhuang, and Y.E.Chin (2010).
Acetylation modulates prolactin receptor dimerization.
  Proc Natl Acad Sci U S A, 107, 19314-19319.  
19596565 J.Chu, Z.Zhang, Y.Zheng, J.Yang, L.Qin, J.Lu, Z.L.Huang, S.Zeng, and Q.Luo (2009).
A novel far-red bimolecular fluorescence complementation system that allows for efficient visualization of protein interactions under physiological conditions.
  Biosens Bioelectron, 25, 234-239.  
  19309697 P.Bernadó, Y.Pérez, J.Blobel, J.Fernández-Recio, D.I.Svergun, and M.Pons (2009).
Structural characterization of unphosphorylated STAT5a oligomerization equilibrium in solution by small-angle X-ray scattering.
  Protein Sci, 18, 716-726.  
19630967 T.M.Bernaciak, J.Zareno, J.T.Parsons, and C.M.Silva (2009).
A novel role for signal transducer and activator of transcription 5b (STAT5b) in beta1-integrin-mediated human breast cancer cell migration.
  Breast Cancer Res, 11, R52.  
19274102 X.Xu, M.M.Kasembeli, X.Jiang, B.J.Tweardy, and D.J.Tweardy (2009).
Chemical probes that competitively and selectively inhibit Stat3 activation.
  PLoS ONE, 4, e4783.  
19788420 Y.Watanabe, M.Ikegawa, Y.Naruse, and M.Tanaka (2009).
A novel splicing variant form suppresses the activity of full-length signal transducer and activator of transcription 5A.
  FEBS J, 276, 6312-6323.  
18765289 C.Schindler, and C.Plumlee (2008).
Inteferons pen the JAK-STAT pathway.
  Semin Cell Dev Biol, 19, 311-318.  
18945591 F.Seydel, E.Garrigan, B.Stutevoss, N.Belkin, B.Makadia, J.Carter, J.D.Shi, A.Davoodi-Semiromi, M.McDuffie, and S.A.Litherland (2008).
GM-CSF induces STAT5 binding at epigenetic regulatory sites within the Csf2 promoter of non-obese diabetic (NOD) mouse myeloid cells.
  J Autoimmun, 31, 377-384.  
18058821 J.S.McMurray (2008).
Structural basis for the binding of high affinity phosphopeptides to Stat3.
  Biopolymers, 90, 69-79.  
18508657 J.W.Kornfeld, F.Grebien, M.A.Kerenyi, K.Friedbichler, B.Kovacic, B.Zankl, A.Hoelbl, H.Nivarti, H.Beug, V.Sexl, M.Muller, L.Kenner, E.W.Mullner, F.Gouilleux, and R.Moriggl (2008).
The different functions of Stat5 and chromatin alteration through Stat5 proteins.
  Front Biosci, 13, 6237-6254.  
18347089 L.Hennighausen, and G.W.Robinson (2008).
Interpretation of cytokine signaling through the transcription factors STAT5A and STAT5B.
  Genes Dev, 22, 711-721.  
18034310 Q.Zhu, and N.Jing (2007).
Computational study on mechanism of G-quartet oligonucleotide T40214 selectively targeting Stat3.
  J Comput Aided Mol Des, 21, 641-648.  
17391978 R.G.Rosenfeld, A.Belgorosky, C.Camacho-Hubner, M.O.Savage, J.M.Wit, and V.Hwa (2007).
Defects in growth hormone receptor signaling.
  Trends Endocrinol Metab, 18, 134-141.  
17182865 C.Mertens, M.Zhong, R.Krishnaraj, W.Zou, X.Chen, and J.E.Darnell (2006).
Dephosphorylation of phosphotyrosine on STAT1 dimers requires extensive spatial reorientation of the monomers facilitated by the N-terminal domain.
  Genes Dev, 20, 3372-3381.  
17216035 C.P.Lim, and X.Cao (2006).
Structure, function, and regulation of STAT proteins.
  Mol Biosyst, 2, 536-550.  
16868551 N.C.Reich, and L.Liu (2006).
Tracking STAT nuclear traffic.
  Nat Rev Immunol, 6, 602-612.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.

 

spacer

spacer