PDBsum entry 1nd7 Go to PDB code:  Tunnel analysis for: 1nd7 calculated with MOLE 2.0 PDB id 1nd7 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.25 21.8 -0.59 0.03 17.4 73 2 3 1 2 2 1 0   2 1.26 1.27 27.0 0.67 0.39 12.0 77 2 2 3 3 3 0 0   3 1.25 1.30 42.5 0.10 -0.05 11.1 79 4 2 3 4 2 1 1   4 1.23 1.26 44.9 -0.04 0.10 9.9 77 2 2 4 4 3 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.