PDBsum entry 1nd7

Pore analysis for: 1nd7 calculated with

MOLE 2.0

PDB id

1nd7

Pores calculated on whole structure

Pores calculated excluding ligands

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6 pores, coloured by radius

6 pores, coloured by radius

6 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.21

3.03

26.8

-0.86

-0.24

10.7

82

1

1

4

3

1

1

1

2

2.14

2.30

27.7

-0.94

-0.27

9.9

77

1

1

3

2

1

1

2

3

1.26

1.26

33.7

-1.29

-0.65

17.8

85

4

3

4

2

0

1

1

4

1.25

1.25

34.7

-1.37

-0.53

18.6

80

5

3

3

2

1

2

1

5

2.01

2.18

43.7

-0.59

-0.33

12.1

81

4

2

5

4

2

1

1

6

2.02

2.17

46.1

-0.61

-0.13

11.0

81

2

2

7

4

3

1

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.