PDBsum entry 1kqs Go to PDB code:  Pore analysis for: 1kqs calculated with MOLE 2.0 PDB id 1kqs Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   32 pores, coloured by radius 32 pores, coloured by radius 32 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 1.21 52.3 -0.58 -0.78 5.5 83 1 0 0 0 0 0 0  C 687 0 A 688 0 A 698 0 C 699 0 A 700 0 G 702 0 G 723 0 G 724 0 C 725 0 C 728 0 C 729 0 G 740 0 C 741 0 G 742 0 G 743 0 G 744 0 G 745 0 A 746 0 G 747 0 G 941 0 A 1020 0 G 1034 0 C 1035 0 G 1036 0 U 2387 0 2 2.69 2.69 55.3 -0.73 -0.66 8.7 75 0 1 0 1 1 0 0  C 699 0 U 701 0 G 702 0 G 703 0 C 704 0 C 719 0 G 720 0 A 721 0 G 722 0 G 723 0 G 724 0 C 725 0 G 740 0 C 741 0 G 742 0 G 743 0 G 744 0 G 941 0 A 1020 0 G 1034 0 C 1035 0 G 1036 0 U 2387 0 3 1.21 1.21 60.3 -0.66 -0.63 5.5 66 1 0 0 0 1 0 0  C 687 0 A 688 0 A 698 0 C 699 0 A 700 0 U 701 0 G 702 0 G 703 0 C 704 0 C 719 0 G 720 0 A 721 0 G 722 0 G 723 0 G 724 0 C 728 0 C 729 0 G 743 0 G 744 0 G 745 0 A 746 0 4 1.14 1.27 60.0 -0.80 -0.31 17.2 76 3 4 1 3 1 1 0  G 88 0 G 89 0 G 336 0 A 484 0 A 485 0 A 486 0 A 489 0 G 504 0 C 505 0 G 506 0 5 2.90 4.89 74.2 -1.96 -0.74 28.0 77 4 8 0 3 0 0 0  G 88 0 G 89 0 A 486 0 U 488 0 A 489 0 A 495 0 G 496 0 A 497 0 A 498 0 G 499 0 A 1390 0 G 1391 0 A 1392 0 A 1427 0 A 1434 0 C 2833 0 C 2907 0 A 2908 0 6 3.01 3.03 92.7 -1.52 -0.63 22.1 80 4 6 0 4 0 0 0  C 58 0 A 495 0 G 496 0 A 497 0 A 498 0 G 499 0 A 1390 0 G 1391 0 A 1392 0 A 1424 0 A 1427 0 A 1434 0 G 1441 0 A 1442 0 G 1443 0 C 2833 0 C 2907 0 A 2908 0 7 2.19 2.20 107.2 -1.05 -0.79 11.9 83 3 4 1 0 0 1 0  C 1228 0 C 1229 0 A 1231 0 G 1235 0 A 2083 0 C 2084 0 U 2550 0 C 2551 0 C 2552 0 G 2574 0 C 2575 0 A 2576 0 A 2577 0 G 2578 0 U 2655 0 G 2658 0 U 2659 0 G 2660 0 U 2661 0 G 2662 0 G 2668 0 U 2669 0 A 2677 0 A 2678 0 G 2679 0 A 2776 0 G 2777 0 G 2809 0 A 2812 0 A 2813 0 G 2829 0 U 2830 0 C 2831 0 C 2832 0 C 2833 0 C 2844 0 C 2907 0 A 2908 0 A 2910 0 C 2911 0 C 2912 0 8 1.33 1.33 138.7 -0.89 -0.74 8.8 87 5 0 2 0 0 1 0  C 40 0 G 41 0 C 42 0 U 43 0 G 44 0 A 45 0 U 46 0 G 77 0 G 78 0 G 79 0 C 101 0 A 102 0 U 103 0 G 104 0 C 136 0 U 137 0 U 138 0 G 142 0 C 143 0 A 144 0 A 145 0 G 184 0 G 185 0 C 252 0 U 253 0 A 255 0 G 258 0 U 299 0 C 300 0 G 301 0 A 302 0 C 303 0 G 304 0 A 305 0 A 306 0 C 344 0 G 345 0 A 352 0 G 353 0 A 354 0 C 355 0 G 358 0 C 444 0 9 1.24 1.22 137.4 -0.64 -0.63 9.7 79 3 4 0 4 1 2 0  C 18 0 U 19 0 G 20 0 G 88 0 G 89 0 A 486 0 U 488 0 A 489 0 A 497 0 A 498 0 G 499 0 G 500 0 G 501 0 A 502 0 G 503 0 A 509 0 U 510 0 U 548 0 A 549 0 C 550 0 A 551 0 A 552 0 G 553 0 G 554 0 G 604 0 G 1322 0 G 1323 0 A 1337 0 U 1338 0 10 1.20 1.20 141.3 -1.10 -0.78 11.6 79 6 5 2 1 1 1 0  A 11 0 U 12 0 G 13 0 C 14 0 C 15 0 A 16 0 G 17 0 C 18 0 U 19 0 G 20 0 A 519 0 A 520 0 U 522 0 C 523 0 A 524 0 G 525 0 U 526 0 U 548 0 A 549 0 C 550 0 A 551 0 A 552 0 G 553 0 G 554 0 G 604 0 A 1321 0 G 1322 0 G 1323 0 A 1337 0 C 2831 0 C 2832 0 C 2833 0 C 2907 0 A 2908 0 A 2910 0 C 2911 0 C 2912 0 11 1.53 1.53 138.5 -1.12 -0.66 13.1 86 6 2 2 2 0 1 0  C 31 0 C 58 0 C 62 0 U 63 0 G 77 0 G 78 0 G 79 0 C 85 0 A 86 0 C 101 0 A 102 0 C 300 0 G 301 0 A 302 0 C 303 0 G 304 0 A 305 0 A 306 0 C 344 0 G 345 0 C 444 0 U 445 0 C 461 0 A 462 0 G 479 0 C 480 0 A 497 0 G 514 0 G 1441 0 A 1442 0 G 1443 0 12 1.57 1.57 143.7 -0.85 -0.75 8.7 86 4 2 4 1 1 0 0  C 40 0 G 41 0 U 43 0 G 44 0 G 47 0 A 48 0 A 49 0 G 77 0 G 78 0 G 79 0 C 101 0 A 102 0 U 103 0 G 104 0 G 105 0 U 108 0 U 109 0 C 110 0 C 111 0 A 114 0 G 116 0 C 124 0 U 125 0 A 128 0 A 129 0 U 299 0 C 300 0 G 301 0 A 302 0 C 303 0 G 304 0 A 305 0 A 306 0 C 344 0 G 345 0 A 352 0 G 353 0 A 354 0 C 443 0 C 444 0 G 1449 0 G 1670 0 U 1671 0 G 1672 0 U 1673 0 13 1.59 1.59 142.8 -1.02 -0.61 13.8 83 7 4 2 4 0 2 0  C 31 0 C 62 0 U 63 0 G 77 0 G 78 0 G 79 0 C 85 0 A 86 0 G 88 0 G 89 0 C 101 0 A 102 0 C 300 0 G 301 0 A 302 0 C 303 0 G 304 0 A 305 0 A 306 0 C 344 0 G 345 0 C 444 0 U 445 0 C 461 0 A 462 0 G 479 0 C 480 0 A 486 0 U 488 0 A 489 0 A 497 0 A 498 0 G 499 0 G 514 0 A 1427 0 14 1.35 1.33 147.9 -0.95 -0.73 11.8 81 3 3 0 3 1 1 0  C 18 0 U 19 0 G 20 0 C 58 0 U 488 0 A 497 0 A 498 0 G 499 0 G 500 0 G 501 0 A 502 0 G 503 0 A 509 0 U 510 0 A 513 0 U 548 0 A 549 0 C 550 0 A 551 0 A 552 0 G 553 0 G 554 0 G 604 0 G 1322 0 G 1323 0 A 1337 0 U 1338 0 G 1441 0 A 1442 0 G 1443 0 15 1.30 1.28 156.5 -1.06 -0.73 13.8 85 4 8 1 3 1 1 0  A 551 0 A 552 0 G 554 0 U 555 0 C 563 0 U 595 0 C 596 0 A 597 0 C 598 0 A 603 0 G 911 0 C 930 0 C 931 0 G 941 0 U 942 0 A 943 0 A 1020 0 C 1033 0 G 1034 0 G 1087 0 A 1088 0 G 1089 0 C 1262 0 C 1263 0 U 1264 0 G 1265 0 U 1266 0 C 1267 0 G 1284 0 U 1285 0 A 1286 0 A 1287 0 U 1288 0 G 1290 0 16 1.33 1.33 159.1 -0.97 -0.74 10.7 79 5 1 0 2 0 1 0  C 31 0 G 41 0 C 42 0 U 43 0 G 44 0 A 45 0 U 46 0 A 49 0 C 62 0 U 63 0 G 64 0 C 65 0 C 85 0 A 86 0 G 88 0 G 89 0 A 102 0 U 103 0 G 104 0 C 136 0 U 137 0 U 138 0 G 142 0 C 143 0 A 144 0 A 145 0 G 184 0 G 185 0 C 252 0 U 253 0 A 255 0 G 258 0 C 355 0 G 358 0 C 443 0 C 444 0 C 461 0 A 462 0 G 479 0 C 480 0 A 486 0 U 488 0 A 489 0 A 497 0 A 498 0 G 499 0 G 514 0 A 1427 0 17 2.92 2.92 161.4 -1.09 -0.81 12.5 85 4 7 2 0 0 0 0  U 1383 0 C 1384 0 G 1385 0 G 1386 0 A 1393 0 C 1394 0 C 1396 0 C 1397 0 G 1410 0 A 1411 0 C 1421 0 G 1438 0 G 1452 0 U 1488 0 G 1491 0 A 1493 0 A 1494 0 C 1495 0 G 1496 0 G 1497 0 U 1503 0 A 1504 0 U 1505 0 G 1512 0 C 1513 0 C 1514 0 U 1531 0 G 1532 0 C 1575 0 G 1576 0 A 1616 0 C 1617 0 G 1622 0 C 1623 0 A 1624 0 C 1644 0 A 1661 0 C 1662 0 G 1663 0 C 1666 0 A 1667 0 C 1680 0 A 1685 0 C 1699 0 C 1700 0 C 1720 0 C 1721 0 U 1722 0 G 1727 0 C 2833 0 C 2907 0 A 2908 0 MG 8029 0 18 2.76 2.90 165.9 -1.26 -0.71 16.1 77 5 8 2 3 2 0 0  G 1382 0 U 1383 0 C 1384 0 G 1385 0 G 1386 0 A 1393 0 C 1394 0 C 1396 0 C 1397 0 G 1398 0 A 1399 0 C 1400 0 G 1401 0 G 1402 0 G 1449 0 G 1498 0 U 1499 0 C 1508 0 C 1509 0 G 1510 0 U 1511 0 G 1556 0 G 1557 0 C 1558 0 G 1628 0 G 1629 0 A 1630 0 A 1716 0 A 1717 0 C 1721 0 U 1722 0 G 1727 0 C 2737 0 C 2833 0 C 2907 0 A 2908 0 19 2.32 2.32 164.4 -1.21 -0.80 14.0 86 6 7 2 0 0 0 0  G 787 0 U 1383 0 C 1384 0 G 1385 0 G 1386 0 A 1393 0 C 1394 0 C 1396 0 C 1397 0 G 1410 0 A 1411 0 C 1421 0 G 1438 0 G 1452 0 U 1488 0 G 1489 0 G 1490 0 G 1496 0 G 1497 0 U 1503 0 A 1504 0 U 1505 0 G 1535 0 C 1536 0 U 1539 0 G 1540 0 G 1541 0 G 1542 0 G 1543 0 C 1617 0 U 1639 0 C 1640 0 A 1641 0 A 1642 0 C 1643 0 C 1644 0 U 1645 0 C 1680 0 A 1685 0 C 1699 0 C 1700 0 C 1720 0 C 1721 0 U 1722 0 G 1727 0 G 1795 0 C 2833 0 C 2907 0 A 2908 0 MG 8029 0 20 1.47 1.53 174.0 -0.56 -0.78 5.4 82 2 2 0 1 1 1 0  A 542 0 G 543 0 A 551 0 A 552 0 G 554 0 U 555 0 C 556 0 C 557 0 C 558 0 C 594 0 U 595 0 C 596 0 A 597 0 C 598 0 A 603 0 G 615 0 U 616 0 C 617 0 G 1076 0 G 1077 0 A 1092 0 G 1093 0 G 1100 0 U 1101 0 C 1105 0 A 1106 0 G 1119 0 U 1120 0 G 1121 0 U 1122 0 A 1123 0 A 1124 0 G 1131 0 G 1226 0 C 1227 0 C 1228 0 C 1229 0 A 1230 0 A 1231 0 G 1239 0 A 1248 0 U 1249 0 C 1250 0 G 1258 0 A 1259 0 G 2574 0 C 2575 0 A 2776 0 G 2777 0 G 3088 9 C 3089 9 G 3090 9 C 3091 9 21 1.29 1.58 182.5 -0.90 -0.58 12.7 78 6 4 1 3 1 1 0  C 31 0 G 41 0 C 42 0 U 43 0 G 44 0 A 45 0 U 46 0 A 49 0 U 63 0 G 64 0 C 65 0 G 84 0 C 85 0 A 86 0 C 87 0 C 101 0 A 102 0 U 103 0 G 104 0 C 136 0 U 137 0 U 138 0 G 142 0 C 143 0 A 144 0 A 145 0 G 184 0 G 185 0 C 252 0 U 253 0 A 255 0 G 258 0 U 335 0 G 336 0 C 355 0 G 358 0 C 443 0 C 444 0 G 482 0 A 484 0 A 489 0 C 490 0 G 504 0 C 505 0 G 506 0 22 2.95 2.95 181.2 -1.01 -0.78 12.1 86 4 7 2 1 0 0 0  G 787 0 U 1383 0 C 1384 0 G 1385 0 G 1386 0 A 1393 0 C 1394 0 C 1396 0 C 1397 0 G 1410 0 A 1411 0 C 1421 0 G 1438 0 G 1452 0 U 1488 0 G 1489 0 G 1490 0 G 1496 0 G 1497 0 U 1503 0 A 1504 0 U 1505 0 C 1534 0 G 1535 0 C 1536 0 U 1583 0 C 1584 0 C 1585 0 G 1601 0 C 1602 0 G 1604 0 G 1605 0 A 1606 0 C 1617 0 C 1643 0 C 1644 0 U 1645 0 G 1646 0 G 1647 0 G 1648 0 G 1649 0 C 1650 0 C 1680 0 A 1685 0 C 1699 0 C 1700 0 C 1720 0 C 1721 0 U 1722 0 G 1727 0 C 2833 0 C 2907 0 A 2908 0 MG 8029 0 23 1.31 1.31 177.9 -1.03 -0.80 12.4 79 5 7 0 2 0 0 0  C 31 0 G 33 0 C 34 0 U 35 0 G 50 0 C 62 0 U 63 0 C 85 0 A 86 0 G 88 0 G 89 0 A 151 0 C 153 0 A 174 0 U 176 0 A 177 0 C 208 0 G 213 0 U 214 0 U 224 0 G 225 0 C 440 0 A 441 0 A 442 0 C 443 0 A 459 0 C 461 0 A 462 0 A 463 0 G 464 0 G 479 0 C 480 0 A 486 0 U 488 0 A 489 0 A 497 0 A 498 0 G 499 0 G 514 0 U 647 0 G 648 0 U 649 0 C 650 0 U 651 0 G 652 0 A 686 0 C 687 0 A 688 0 G 690 0 A 698 0 C 699 0 A 700 0 G 702 0 C 728 0 C 729 0 G 742 0 G 743 0 G 744 0 G 745 0 A 746 0 G 747 0 A 758 0 C 759 0 A 1427 0 24 3.27 3.55 177.2 -1.14 -0.81 14.1 82 5 8 1 3 0 0 0  C 31 0 G 33 0 C 34 0 U 35 0 G 50 0 C 62 0 U 63 0 C 85 0 A 86 0 G 88 0 G 89 0 A 151 0 C 153 0 A 174 0 U 176 0 A 177 0 C 208 0 G 213 0 U 214 0 U 224 0 G 225 0 C 440 0 A 441 0 A 442 0 C 443 0 A 459 0 C 461 0 A 462 0 A 463 0 G 464 0 G 479 0 C 480 0 A 486 0 U 488 0 A 489 0 A 497 0 A 498 0 G 499 0 G 514 0 U 647 0 G 648 0 U 649 0 C 650 0 U 651 0 G 724 0 C 725 0 G 740 0 C 741 0 G 742 0 A 758 0 C 759 0 G 941 0 A 1020 0 G 1034 0 C 1035 0 G 1036 0 G 1037 0 A 1427 0 U 2387 0 C 2396 0 25 1.66 1.65 181.1 -1.15 -0.79 13.5 84 7 8 3 1 0 1 0  G 33 0 C 34 0 U 35 0 G 50 0 U 63 0 G 77 0 G 78 0 G 79 0 C 101 0 A 102 0 A 151 0 C 153 0 A 174 0 U 176 0 A 177 0 C 208 0 G 213 0 U 214 0 U 224 0 G 225 0 C 300 0 G 301 0 A 302 0 C 303 0 G 304 0 A 305 0 A 306 0 C 344 0 G 345 0 C 440 0 A 441 0 A 442 0 C 443 0 C 444 0 U 445 0 A 459 0 G 464 0 U 647 0 G 648 0 U 649 0 C 650 0 U 651 0 C 725 0 G 740 0 C 741 0 G 742 0 A 758 0 C 759 0 G 941 0 A 1020 0 G 1034 0 C 1035 0 G 1036 0 G 1037 0 U 2387 0 C 2396 0 26 2.73 2.73 182.0 -1.00 -0.76 11.8 77 4 7 0 2 1 0 0  C 31 0 G 33 0 C 34 0 U 35 0 G 50 0 C 62 0 U 63 0 C 85 0 A 86 0 G 88 0 G 89 0 A 151 0 C 153 0 A 174 0 U 176 0 A 177 0 C 208 0 G 213 0 U 214 0 U 224 0 G 225 0 C 440 0 A 441 0 A 442 0 C 443 0 A 459 0 C 461 0 A 462 0 A 463 0 G 464 0 G 479 0 C 480 0 A 486 0 U 488 0 A 489 0 A 497 0 A 498 0 G 499 0 G 514 0 U 647 0 G 648 0 U 649 0 C 650 0 U 651 0 G 652 0 A 686 0 G 690 0 U 701 0 G 702 0 G 703 0 C 704 0 G 720 0 A 721 0 G 722 0 G 723 0 G 724 0 G 742 0 G 743 0 G 744 0 G 747 0 A 758 0 C 759 0 G 1036 0 A 1427 0 27 2.52 2.52 189.8 -0.99 -0.71 10.4 82 6 2 4 3 0 0 0  G 88 0 G 89 0 A 466 0 G 467 0 A 476 0 A 486 0 U 488 0 A 489 0 A 497 0 A 498 0 G 499 0 A 513 0 G 514 0 U 845 0 C 1228 0 C 1229 0 A 1230 0 A 1427 0 C 1428 0 G 2099 0 A 2100 0 G 2102 0 A 2103 0 A 2486 0 C 2487 0 A 2497 0 C 2498 0 U 2499 0 C 2500 0 G 2501 0 U 2527 0 U 2528 0 G 2529 0 G 2540 0 U 2541 0 A 2553 0 U 2554 0 C 2555 0 G 2572 0 G 2573 0 G 2574 0 C 2575 0 U 2590 0 C 2591 0 G 2592 0 G 2602 0 G 2603 0 A 2604 0 U 2619 0 U 2620 0 A 2637 0 C 2644 0 U 2645 0 G 2646 0 DA 76 3 DC 74 4 DC 75 4 PPU 76 4 PHA 77 4 ACA 78 4 BTN 79 4 28 1.32 1.33 205.3 -0.74 -0.73 8.1 81 2 3 0 2 2 1 0  A 551 0 A 552 0 G 554 0 U 555 0 C 563 0 U 595 0 C 596 0 A 597 0 C 598 0 A 603 0 C 699 0 U 701 0 G 702 0 G 703 0 C 704 0 G 720 0 A 721 0 G 722 0 G 723 0 G 724 0 C 725 0 C 741 0 G 742 0 G 743 0 G 744 0 U 909 0 C 910 0 G 928 0 A 929 0 C 930 0 C 931 0 U 932 0 C 933 0 C 934 0 G 1031 0 A 1032 0 C 1033 0 G 1034 0 C 1035 0 G 1036 0 G 1037 0 U 1266 0 C 1267 0 C 1268 0 G 1269 0 U 1270 0 A 1271 0 C 1272 0 U 1279 0 A 1280 0 C 1281 0 U 1282 0 G 1283 0 G 1284 0 U 1298 0 G 1299 0 A 2395 0 C 2396 0 29 1.29 1.62 204.9 -1.08 -0.69 15.2 80 6 11 2 4 1 0 0  C 31 0 G 33 0 C 34 0 U 35 0 G 50 0 C 62 0 U 63 0 C 85 0 A 86 0 C 87 0 A 151 0 C 153 0 A 174 0 U 176 0 A 177 0 C 208 0 G 213 0 U 214 0 U 224 0 G 225 0 U 335 0 G 336 0 C 440 0 A 441 0 A 442 0 C 443 0 A 459 0 C 461 0 A 463 0 G 464 0 G 482 0 A 484 0 A 489 0 C 490 0 G 504 0 C 505 0 G 506 0 U 647 0 G 648 0 U 649 0 C 650 0 U 651 0 C 725 0 G 740 0 C 741 0 G 742 0 A 758 0 C 759 0 G 941 0 A 1020 0 G 1034 0 C 1035 0 G 1036 0 G 1037 0 U 2387 0 C 2396 0 30 1.17 1.17 218.0 -0.80 -0.78 8.4 85 3 4 1 2 1 1 0  A 551 0 A 552 0 G 554 0 U 555 0 C 563 0 U 595 0 C 596 0 A 597 0 C 598 0 A 603 0 U 651 0 G 652 0 A 686 0 C 687 0 A 688 0 A 698 0 C 699 0 A 700 0 G 702 0 C 728 0 C 729 0 C 741 0 G 742 0 G 743 0 G 744 0 G 745 0 A 746 0 G 747 0 U 909 0 C 910 0 G 928 0 A 929 0 C 930 0 C 931 0 U 932 0 C 933 0 C 934 0 G 1031 0 A 1032 0 C 1033 0 G 1034 0 C 1035 0 G 1036 0 G 1037 0 U 1266 0 C 1267 0 C 1268 0 G 1269 0 U 1270 0 A 1271 0 C 1272 0 U 1279 0 A 1280 0 C 1281 0 U 1282 0 G 1283 0 G 1284 0 U 1298 0 G 1299 0 A 2395 0 C 2396 0 31 1.38 1.38 25.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 1162 0 G 1163 0 U 1164 0 A 1166 0 G 1175 0 C 1176 0 G 1178 0 C 1179 0 U 1180 0 A 1181 0 C 1183 0 C 1184 0 G 1190 0 A 1191 0 A 1192 0 A 1193 0 A 1194 0 G 1195 0 32 1.21 1.21 39.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 1162 0 G 1163 0 U 1164 0 A 1166 0 G 1172 0 A 1173 0 G 1175 0 C 1176 0 A 1177 0 G 1178 0 C 1179 0 U 1180 0 C 1183 0 C 1184 0 G 1190 0 A 1191 0 A 1192 0 A 1193 0 A 1200 0 C 1201 0 Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.