PDBsum entry 1kqs Go to PDB code:  Tunnel analysis for: 1kqs calculated with MOLE 2.0 PDB id 1kqs Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.23 17.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 1176 0 A 1177 0 G 1197 0 U 1198 0 A 1200 0 C 1201 0 A 1202 0 2 1.33 1.33 22.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 1173 0 C 1176 0 A 1177 0 G 1178 0 C 1179 0 A 1181 0 A 1194 0 G 1195 0 G 1197 0 U 1198 0 C 1201 0 A 1202 0 3 1.09 1.09 36.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 1165 0 A 1166 0 G 1167 0 G 1172 0 A 1173 0 A 1174 0 C 1176 0 A 1177 0 G 1178 0 C 1179 0 U 1180 0 G 1197 0 U 1198 0 C 1201 0 A 1202 0 4 1.20 1.45 17.3 -1.65 -0.66 21.9 85 2 1 0 1 0 0 0  U 137 0 C 139 0 A 261 0 5 1.21 1.45 21.0 -1.35 -0.69 18.9 85 2 2 0 1 0 0 0  U 137 0 C 260 0 A 261 0 6 1.16 1.69 15.2 1.50 0.41 6.7 82 0 2 0 5 1 1 0   7 1.33 1.33 15.1 -0.82 -0.10 3.3 92 0 1 2 3 1 0 0   8 2.01 2.01 30.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 1902 0 U 1903 0 A 1904 0 U 1905 0 A 1934 0 C 1935 0 C 1936 0 Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.