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Ligand clusters for UniProt code Q9Y6Y9

Ligand clusters for Q9Y6Y9: Lymphocyte antigen 96 OS=Homo sapiens GN=LY96 PE=1 SV=2

3 ligand clusters


Cluster 1. 8 ligand types 14 ligands		Cluster 2. 1 ligand type 2 ligands		Cluster 3. 1 ligand type 4 ligands

Representative protein: 2e56A

Structures

PDB		Schematic diagram

2e56A
2e59A
4g8aC
3fxiC
3ulaB
		more ...

Cluster 1 contains 8 ligand types

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Ligand

Description

1. Ligand: DAO × 1

lauric acid

Lauric acid

PDB code: 3fxi(C).

2. Ligand: FTT × 4

3-Hydroxy-Tetradecanoic acid

PDB codes: 3fxi(C),

3. Ligand: MYR × 3

Myristic acid

PDB codes: 2e56(A), 3fxi(C).

4. Ligand: E55 × 2

3-O-Decyl-2-Deoxy-6-O-{2-Deoxy-3-O-[(3r)-3- Methoxydecyl]-6-O-Methyl-2-[(11z)-Octadec-11-
Enoylamino]-4-O-Phosphono-Beta-D-Glucopyranosyl}-2- [(3-Oxotetradecanoyl)amino]-1-O-Phosphono-
Alpha-D- Glucopyranose

PDB codes: 2z65(C), 3ula(B).

5. Ligand: LP4-LP5-DAO-MYR-KDO × 1

LP4=2-Deoxy-3-O-[(3r)-3-Hydroxytetradecanoyl]-2-{[(3r)-3- Hydroxytetradecanoyl]amino}-4-O-Phosphono-
Beta-D- Glucopyranose, LP5=(R)-((2r,3s,4r,5r,6r)-3-Hydroxy-2-(Hydroxymethyl)-5- ((R)-3-Hydroxytetradecanamido)-6-
(Phosphonooxy) tetrahydro-2h-Pyran-4-Yl) 3-Hydroxytetradecanoate, DAO=Lauric acid, MYR=Myristic acid, KDO=3-Deoxy-Alpha-D-Manno-Oct-2-Ulopyranosonic acid.

PDB code: 4g8a(C).

6. Ligand: LP5-LP4 × 1

LP5=(R)-((2r,3s,4r,5r,6r)-3-Hydroxy-2-(Hydroxymethyl)-5- ((R)-3-Hydroxytetradecanamido)-6-
(Phosphonooxy) tetrahydro-2h-Pyran-4-Yl) 3-Hydroxytetradecanoate, LP4=2-Deoxy-3-O-[(3r)-3-Hydroxytetradecanoyl]-2-{[(3r)-3- Hydroxytetradecanoyl]amino}-4-O-Phosphono-
Beta-D- Glucopyranose.

PDB code: 2e59(A).

7. Ligand: PA1-PA1-KDO-GMH-GMH-GMH-KDO × 1

PA1=2-Amino-2-Deoxy-Alpha-D-Glucopyranose, KDO=3-Deoxy-Alpha-D-Manno-Oct-2-Ulopyranosonic acid, GMH=L-Glycero-Alpha-D-Manno-Heptopyranose.

PDB code: 3fxi(C).