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Ligand clusters for UniProt code Q9UBT2

Ligand clusters for Q9UBT2: SUMO-activating enzyme subunit 2 from Homo sapiens

Top 6 (of 10) ligand clusters
Cluster 1.
8 ligand types
12 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3kycB  
JSmol
 

Structures

PDB   Schematic diagram
3kycB    
6cwzD    
1y8rB    
6xogB    
6xoiB    
 more ...

 

 Cluster 1 contains 8 ligand types

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Ligand Description

_Mg
 
1. Metal: _MG × 2
PDB codes: 1y8q(B), 1y8r(B).


 
2. Ligand: SO4 × 3
Sulfate ion
PDB codes: 6xog(B), 6xoh(B), 6xoi(B).


 
3. Ligand: ATP × 2
Adenosine-5'-Triphosphate
PDB codes: 1y8q(B), 1y8r(B).


 
4. Ligand: JZU × 1
5'-Deoxy-5'-(Sulfamoylamino)adenosine
PDB code: 3kyc(B).


 
5. Ligand: VAY × 1
{(1r,2r,3s,4r)-4-[(5-{4-[(1s)-1-(6-Bromopyridin-2-Yl)- 1-Hydroxyethyl]thiophene-2-
Carbonyl}pyrimidin-4-Yl) amino]-2,3-Dihydroxycyclopentyl}methyl sulfamate
PDB code: 6xog(B).


 
6. Ligand: VB7 × 1
{(1r,2s,4r)-4-[(5-{4-[(1r)-3,4-Dihydro-1h-2-Benzopyran- 1-Yl]thiophene-2-Carbonyl}pyrimidin-4-
Yl)amino]-2- Hydroxycyclopentyl}methyl sulfamate
PDB code: 6xoh(B).


 
7. Ligand: VBA × 1
[(1r,2r,3s,4r)-4-{[5-(1-Benzyl-1h-Pyrazole-3-Carbonyl) pyrimidin-4-Yl]amino}-2,3-
Dihydroxycyclopentyl]methyl sulfamate
PDB code: 6xoi(B).


 
8. Ligand: VMX × 1
5'-{[(3-Aminopropyl)sulfonyl]amino}-5'-Deoxyadenosine
PDB code: 3kyd(B).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: FHJ × 1
Dimethyl (1s,2s,3r,4r)-1-[(1s)-2-(4-Methylphenyl)-1- (Phenylamino)ethyl]-7-Oxabicyclo[2.2.1]hept-5-
Ene-2,3- Dicarboxylate
PDB code: 6cwy(D).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4w5v(B).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 6cwy(D).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 6cwy(D).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 6cwy(D).

 

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