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EBI
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PDBsum
Ligand clusters for UniProt code Q9NY33
Ligand clusters for Q9NY33: Dipeptidyl peptidase 3 from Homo sapiens
6 ligand clusters
Cluster 1.
7 ligand types
12 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
7 ligands
Cluster 5.
1 ligand type
5 ligands
Cluster 6.
1 ligand type
4 ligands
Representative protein: 5e2qA
Structures
PDB
Schematic diagram
5e2q
A
3t6b
A
3t6j
A
5ehh
A
5egy
A
more ...
Cluster 1 contains 7 ligand types
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Ligand
Description
_Zn
1. Metal:
_ZN × 5
PDB codes:
5e33
(A),
5e3a
(A),
5e3c
(A),
5egy
(A),
5ehh
(A).
2. Ligand:
VAL-VAL-TYR-PRO-TRP × 2
PDB codes:
3t6b
(A),
3t6j
(A).
3. Ligand:
ASP-ARG-VAL-TYR-ILE-HIS-PRO-PHE × 1
PDB code:
5e2q
(A).
4. Ligand:
ILE-VAL-TYR-PRO-TRP × 1
PDB code:
5e3c
(A).
5. Ligand:
TYR-GLY-GLY-PHE-LEU × 1
PDB code:
5e3a
(A).
6. Ligand:
TYR-GLY-GLY-PHE-MET × 1
PDB code:
5e33
(A).
7. Ligand:
TYR-PRO-PHE-PHE-NH2 × 1
NH2
=Amino group.
PDB code:
5ehh
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 1
PDB code:
3fvy
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 1
PDB code:
3fvy
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
_Mg
1. Metal:
_MG × 7
PDB codes:
3fvy
(A),
5e2q
(A),
5e33
(A),
5e3a
(A),
5e3c
(A),
5egy
(A),
5ehh
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
__K
1. Metal:
__K × 5
PDB codes:
5e2q
(A),
5e33
(A),
5e3a
(A),
5e3c
(A),
5ehh
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Mg
1. Metal:
_MG × 4
PDB codes:
5e33
(A),
5e3a
(A),
5e3c
(A),
5ehh
(A).