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Ligand clusters for UniProt code Q9NY33

Ligand clusters for Q9NY33: Dipeptidyl peptidase 3 from Homo sapiens

6 ligand clusters
Cluster 1.
7 ligand types
12 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
7 ligands
Cluster 5.
1 ligand type
5 ligands
Cluster 6.
1 ligand type
4 ligands
Representative protein: 5e2qA  
JSmol
 

Structures

PDB   Schematic diagram
5e2qA    
3t6bA    
3t6jA    
5ehhA    
5egyA    
 more ...

 

 Cluster 1 contains 7 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 5
PDB codes: 5e33(A), 5e3a(A), 5e3c(A), 5egy(A), 5ehh(A).


 
2. Ligand: VAL-VAL-TYR-PRO-TRP × 2
PDB codes: 3t6b(A), 3t6j(A).


 
3. Ligand: ASP-ARG-VAL-TYR-ILE-HIS-PRO-PHE × 1
PDB code: 5e2q(A).


 
4. Ligand: ILE-VAL-TYR-PRO-TRP × 1
PDB code: 5e3c(A).


 
5. Ligand: TYR-GLY-GLY-PHE-LEU × 1
PDB code: 5e3a(A).


 
6. Ligand: TYR-GLY-GLY-PHE-MET × 1
PDB code: 5e33(A).


 
7. Ligand: TYR-PRO-PHE-PHE-NH2 × 1
NH2=Amino group.
PDB code: 5ehh(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description

_Cl
 
1. Metal: _CL × 1
PDB code: 3fvy(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description

_Zn
 
1. Metal: _ZN × 1
PDB code: 3fvy(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description

_Mg
 
1. Metal: _MG × 7
PDB codes: 3fvy(A), 5e2q(A), 5e33(A), 5e3a(A), 5e3c(A), 5egy(A), 5ehh(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

__K
 
1. Metal: __K × 5
PDB codes: 5e2q(A), 5e33(A), 5e3a(A), 5e3c(A), 5ehh(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Mg
 
1. Metal: _MG × 4
PDB codes: 5e33(A), 5e3a(A), 5e3c(A), 5ehh(A).

 

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