Ligand clusters for UniProt code Q9KHL8

Ligand clusters for Q9KHL8: D,D-dipeptidase/D,D-carboxypeptidase from Enterococcus faecalis

		Top 6 (of 14) ligand clusters Cluster 1. 4 ligand types 5 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 2 ligands
Representative protein: 4f78A

Structures

PDB		Schematic diagram
4f78A
4muqA

Cluster 1 contains 4 ligand types

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Ligand		Description
_Zn		1. Metal: _ZN × 2 PDB codes: 4f78(A), 4muq(A).
		2. Ligand: 2D8 × 1 (2r)-3-[(R)-[(1s)-1-Aminoethyl](hydroxy)phosphoryl]-2- Methylpropanoic acid PDB code: 4muq(A).
		3. Ligand: LY0 × 1 (2r)-3-[(R)-[(1r)-1-Aminoethyl](hydroxy)phosphoryl]-2- Methylpropanoic acid PDB code: 4muq(A).
		4. Ligand: SO4 × 1 Sulfate ion PDB code: 4f78(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4f78(A).
		2. Ligand: PE3 × 1 3,6,9,12,15,18,21,24,27,30,33,36,39- Tridecaoxahentetracontane-1,41-Diol PDB code: 4muq(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4f78(A).
		2. Ligand: PE3 × 1 3,6,9,12,15,18,21,24,27,30,33,36,39- Tridecaoxahentetracontane-1,41-Diol PDB code: 4muq(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PE3 × 1 3,6,9,12,15,18,21,24,27,30,33,36,39- Tridecaoxahentetracontane-1,41-Diol PDB code: 4muq(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: PE3 × 1 3,6,9,12,15,18,21,24,27,30,33,36,39- Tridecaoxahentetracontane-1,41-Diol PDB code: 4muq(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 4f78(A), 4muq(A).