Ligand clusters for UniProt code Q9JJX7

Ligand clusters for Q9JJX7: Tyrosyl-DNA phosphodiesterase 2 from Mus musculus

		Top 6 (of 29) ligand clusters Cluster 1. 11 ligand types 30 ligands Cluster 2. 3 ligand types 3 ligands Cluster 3. 3 ligand types 4 ligands Cluster 4. 2 ligand types 4 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 3 ligand types 5 ligands
Representative protein: 4puqA

Structures

PDB		Schematic diagram
4puqA
5inkA
4gz1A
5inlA
5inqA
		more ...

Cluster 1 contains 11 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 8 PDB codes: 4gyz(A), 4gz1(A), 4puq(A), 5ht2(A), 5ink(A), 5inl(A), 5inm(A), 5j3z(A).
		2. Ligand: GOL × 2 glycerin Glycerol PDB codes: 4puq(A), 5j3z(A).
_Mn		3. Metal: _MN × 2 PDB codes: 5inp(A), 5j42(A).
		4. Ligand: EDO × 4 1,2-Ethanediol PDB codes: 4gz0(A), 5j3z(A).
		5. Ligand: TLA × 4 L(+)-Tartaric acid PDB codes: 5j42(A),
		6. Ligand: 6FQ × 2 2,4-Dioxo-10-[3-(1h-Tetrazol-5-Yl)phenyl]-2,3,4,10- Tetrahydropyrimido[4,5-B]quinoline-8- Carbonitrile PDB codes: 5j3z(A),
		7. Ligand: 6FV × 2 10-(4-Hydroxyphenyl)-2,4-Dioxo-2,3,4,10- Tetrahydropyrimido[4,5-B]quinoline-8-Carbonitrile PDB codes: 5j42(A),
		8. Ligand: SO4 × 2 Sulfate ion PDB codes: 5inm(C), 5inn(C).
_Ca		9. Metal: _CA × 2 PDB codes: 5inq(A), 5tvq(A).
		10. Ligand: 6AH × 1 6-Aminohexan-1-Ol PDB code: 4gz0(A).
		11. Ligand: D5M × 1 2'-Deoxyadenosine-5'-Monophosphate PDB code: 4gyz(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4gz0(A).
		2. Ligand: EPE × 1 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB code: 4gz1(A).
		3. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 5inq(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 4gz0(A), 5j42(A).
		2. Ligand: PO4 × 1 Phosphate ion PDB code: 5tvp(I).
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 5inn(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 5ink(A), 5inm(A), 5inn(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4gz0(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: TLA × 1 L(+)-Tartaric acid PDB code: 5j42(A).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: ACT × 2 Acetate ion PDB codes: 4gz0(A), 5tvq(A).
		2. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 4gz0(A), 5tvp(I).
_Cl		3. Metal: _CL × 1 PDB code: 5inn(C).