Ligand clusters for UniProt code Q9JHF9

Ligand clusters for Q9JHF9: Lymphocyte antigen 96 from Mus musculus

		4 ligand clusters Cluster 1. 3 ligand types 5 ligands Cluster 2. 2 ligand types 4 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 4 ligands
Representative protein: 5ijdC

Structures

PDB		Schematic diagram
5ijdC
3vq2C
5ijcC
2z64C
3vq1C
		more ...

Cluster 1 contains 3 ligand types

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Ligand		Description
		1. Ligand: LP4-LP5-DAO-MYR × 2 LP4=2-Deoxy-3-O-[(3r)-3-Hydroxytetradecanoyl]-2-{[(3r)-3- Hydroxytetradecanoyl]amino}-4-O-Phosphono- Beta-D- Glucopyranose, LP5=(R)-((2r,3s,4r,5r,6r)-3-Hydroxy-2-(Hydroxymethyl)-5- ((R)-3-Hydroxytetradecanamido)-6- (Phosphonooxy) tetrahydro-2h-Pyran-4-Yl) 3-Hydroxytetradecanoate, DAO=Lauric acid, MYR=Myristic acid. PDB codes: 3vq2(C), 5ijd(C).
		2. Ligand: V2A × 2 Neoseptin 3 PDB codes: 5ijc(C),
		3. Ligand: LP4-LP5 × 1 LP4=2-Deoxy-3-O-[(3r)-3-Hydroxytetradecanoyl]-2-{[(3r)-3- Hydroxytetradecanoyl]amino}-4-O-Phosphono- Beta-D- Glucopyranose, LP5=(R)-((2r,3s,4r,5r,6r)-3-Hydroxy-2-(Hydroxymethyl)-5- ((R)-3-Hydroxytetradecanamido)-6- (Phosphonooxy) tetrahydro-2h-Pyran-4-Yl) 3-Hydroxytetradecanoate. PDB code: 3vq1(C).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 2z64(C).
		2. Ligand: NAG-NAG × 3 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 5ijb(C), 5ijc(C), 5ijd(C).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 2z64(C).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG × 4 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 2z64(C), 5ijb(C), 5ijc(C), 5ijd(C).