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Ligand clusters for UniProt code Q9I7A8

Ligand clusters for Q9I7A8: Peptide deformylase from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

3 ligand clusters
Cluster 1.
5 ligand types
9 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
1 ligand type
1 ligand
Representative protein: 1ix1A  
JSmol
 

Structures

PDB   Schematic diagram
1ix1A    
1n5nA    
1lryA    
1s17A    

 

 Cluster 1 contains 5 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 3
PDB codes: 1ix1(A), 1lry(A), 1n5n(A).


 
2. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 1n5n(A),


 
3. Ligand: BB2 × 2
Actinonin
PDB codes: 1ix1(A), 1lry(A).


 
4. Ligand: GNR × 1
2-(3,4-Dihydro-3-Oxo-2h-Benzo[b][1,4]thiazin-2-Yl)-N- Hydroxyacetamide
PDB code: 1s17(A).

_Ni
 
5. Metal: _NI × 1
PDB code: 1s17(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 1s17(A).


 
2. Ligand: MHA × 1
(Carbamoylmethyl-Carboxymethyl-Amino)-Acetic acid
PDB code: 1ix1(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: MHA × 1
(Carbamoylmethyl-Carboxymethyl-Amino)-Acetic acid
PDB code: 1ix1(A).

 

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