Ligand clusters for UniProt code Q9GK12

Ligand clusters for Q9GK12: Peptidoglycan recognition protein 1 from Camelus dromedarius

		Top 6 (of 8) ligand clusters Cluster 1. 20 ligand types 35 ligands Cluster 2. 5 ligand types 6 ligands Cluster 3. 2 ligand types 3 ligands Cluster 4. 2 ligand types 8 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 2r2kA

Structures

PDB		Schematic diagram
2r2kA
3corA
3rt4A
3nw3A
3olkA
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Cluster 1 contains 20 ligand types

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 3c2x(A), 3qv4(A), 7dy5(A).
		2. Ligand: STE × 2 stearic acid Stearic acid PDB codes: 4fnn(A), 4gf9(A).
		3. Ligand: PLM × 1 palmitic acid Palmitic acid PDB code: 4oug(A).
		4. Ligand: EDO × 7 1,2-Ethanediol PDB codes: 3qv4(A), 5dwf(A), 6a89(A), 6j3w(A), 6jte(A), 6jve(A), 7dy5(A).
		5. Ligand: AMU × 3 Beta-N-Acetylmuramic acid PDB codes: 3olk(A), 4ebs(A), 5e0b(A).
		6. Ligand: LP5 × 3 (R)-((2r,3s,4r,5r,6r)-3-Hydroxy-2-(Hydroxymethyl)-5- ((R)-3-Hydroxytetradecanamido)-6- (Phosphonooxy) tetrahydro-2h-Pyran-4-Yl) 3-Hydroxytetradecanoate PDB codes: 3rt4(A), 4gf9(A), 4oug(A).
		7. Ligand: ACT × 2 Acetate ion PDB codes: 6jte(A), 6jve(A).
		8. Ligand: ISJ × 2 (3r,4r)-3-[(1-Carboxyethenyl)oxy]-4-Hydroxycyclohexa-1, 5-Diene-1-Carboxylic acid PDB codes: 3tru(A), 3uml(A).
		9. Ligand: 11Z × 1 11-Cyclohexylundecanoic acid PDB code: 4opp(A).
		10. Ligand: ALA-DGL × 1 DGL=D-Glutamic acid. PDB code: 3qv4(A).
		11. Ligand: BUA × 1 Butanoic acid PDB code: 3umq(A).
		12. Ligand: DGN-ALA-LAC × 1 DGN=D-Glutamine, LAC=Lactic acid. PDB code: 3nw3(A).
		13. Ligand: LTC × 1 (2s)-1-({3-O-[2-(Acetylamino)-4-Amino-2,4,6-Trideoxy- Beta-D-Galactopyranosyl]-Alpha-D- Glucopyranosyl}oxy)- 3-(Heptanoyloxy)propan-2-Yl (7z)-Pentadec-7-Enoate PDB code: 3o4k(A).
		14. Ligand: MYR × 1 Myristic acid PDB code: 3usx(A).
		15. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3qj1(A).
		16. Ligand: PNR × 1 4-Nitrophenyl hexadecanoate PDB code: 4q8s(A).
		17. Ligand: RIB × 1 Alpha-D-Ribofuranose PDB code: 6a89(A).
		18. Ligand: SGN-UAP × 1 SGN=2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-Alpha-D-Glucopyranose, UAP=4-Deoxy-2-O-Sulfo-Alpha-L-Threo-Hex-4-Enopyranuronic acid. PDB code: 3ogx(A).
		19. Ligand: TLA × 1 L(+)-Tartaric acid PDB code: 2z9n(A).
		20. Ligand: XXC × 1 7-Phenylheptanoic acid PDB code: 4orv(A).
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Cluster 2 contains 5 ligand types

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Ligand		Description
		1. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 6j3w(A), 6jx8(A).
		2. Ligand: GLC-GLC × 1 GLC=Alpha-D-Glucopyranose. PDB code: 3cxa(A).
		3. Ligand: NGA × 1 2-Acetamido-2-Deoxy-Beta-D-Galactopyranose PDB code: 3cor(A).
		4. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 6jve(A).
		5. Ligand: RAM × 1 Alpha-L-Rhamnopyranose PDB code: 3cg9(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3c2x(A), 3qv4(A).
		2. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 2r2k(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3c2x(A), 3ogx(A).
		2. Ligand: TLA × 6 L(+)-Tartaric acid PDB codes: 2r2k(A), 6j3w(A), 6jte(A), 6jve(A), 6jx8(A), 7dy5(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: TLA × 1 L(+)-Tartaric acid PDB code: 2r2k(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: TLA × 1 L(+)-Tartaric acid PDB code: 2z9n(A).