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Ligand clusters for UniProt code Q9FD73

Ligand clusters for Q9FD73: Diphosphomevalonate decarboxylase from Staphylococcus epidermidis

Top 6 (of 7) ligand clusters
Cluster 1.
5 ligand types
11 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 4dpuA  
JSmol
 

Structures

PDB   Schematic diagram
4dpuA    
3qt6A    
4dpwA    
3qt8A    
4du7A    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4dpx(A).


 
2. Ligand: 2P0 × 3
1-({[(S)-Hydroxy(phosphonooxy)phosphoryl]oxy}acetyl)-L- Proline
PDB codes: 3qt6(A), 4dpy(A), 4du8(A).


 
3. Ligand: FM0 × 3
(3r)-3-(Fluoromethyl)-3-Hydroxy-5-{[(S)- Hydroxy(phosphonooxy)phosphoryl]oxy}pentanoic acid
PDB codes: 3qt7(A), 3qt8(A), 4dpu(A).


 
4. Ligand: AGS × 2
Phosphothiophosphoric acid-Adenylate ester
PDB codes: 4dpu(A), 4dpw(A).


 
5. Ligand: DP6 × 2
(3r)-3-Hydroxy-5-{[(R)-Hydroxy(phosphonooxy) phosphoryl]oxy}-3-Methylpentanoic acid
PDB codes: 4dpw(A), 4du7(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 3qt8(A), 4dpt(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4dpx(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4dpx(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4du8(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4du8(A).

 

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