Ligand clusters for UniProt code Q8N371

Ligand clusters for Q8N371: Bifunctional peptidase and arginyl-hydroxylase JMJD5 from Homo sapiens

		Top 6 (of 8) ligand clusters Cluster 1. 18 ligand types 47 ligands Cluster 2. 1 ligand type 9 ligands Cluster 3. 1 ligand type 6 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 6f4nA

Structures

PDB		Schematic diagram
6f4nA
3uyjA
4gazA
6f4sA
6f4rA
		more ...

Cluster 1 contains 18 ligand types

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Ligand		Description
_Mn		1. Metal: _MN × 10 PDB codes: 6f4n(A), 6f4o(A), 6f4p(A), 6f4q(A), 6f4r(A), 6f4s(A), 6f4t(A), 6i9l(A), 6i9m(A), 6i9n(A).
_Zn		2. Metal: _ZN × 5 PDB codes: 4aap(A), 5fbj(A), 6avs(A), 6ax3(A).
		3. Ligand: NMM × 2 tilarginine (2s)-2-Amino-5-[(N-Methylcarbamimidoyl)amino]pentanoic acid PDB codes: 5fbj(A), 6avs(A).
		4. Ligand: GOL × 1 glycerin Glycerol PDB code: 6i9m(A).
		5. Ligand: SIN × 1 succinic acid Succinic acid PDB code: 6f4o(A).
		6. Ligand: AKG × 7 2-Oxoglutaric acid PDB codes: 3uyj(A), 4gjz(A), 4qu1(A), 5fbj(A), 6ax3(A), 6f4n(A), 6f4s(A).
		7. Ligand: OGA × 7 N-Oxalylglycine PDB codes: 4aap(A), 4gaz(A), 4gjy(A), 6f4p(A), 6f4q(A), 6f4r(A), 6f4t(A).
_Ni		8. Metal: _NI × 3 PDB codes: 3uyj(A), 4gaz(A), 4qu1(A).
_Co		9. Metal: _CO × 2 PDB codes: 4gjy(A), 4gjz(A).
		10. Ligand: 2HG × 1 (2r)-2-Hydroxypentanedioic acid PDB code: 6i9m(A).
		11. Ligand: 2MR × 1 N3, N4-Dimethylarginine PDB code: 6ax3(A).
		12. Ligand: ARG × 1 PDB code: 6f4p(A).
		13. Ligand: ARG-CYS × 1 PDB code: 6f4q(A).
		14. Ligand: CYS-ALA-ARG × 1 PDB code: 6f4t(A).
		15. Ligand: CYS-ALA-ARG-ALA × 1 PDB code: 6f4r(A).
		16. Ligand: CYS-ALA-ARG-ALA-TYR × 1 PDB code: 6f4s(A).
		17. Ligand: PD2 × 1 Pyridine-2,4-Dicarboxylic acid PDB code: 6i9l(A).
		18. Ligand: S2G × 1 (2s)-2-Hydroxypentanedioic acid PDB code: 6i9n(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: TRS × 9 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB codes: 6f4o(A), 6f4p(A), 6f4q(A), 6f4r(A), 6f4s(A), 6f4t(A), 6i9l(A), 6i9m(A), 6i9n(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 6 glycerin Glycerol PDB codes: 4qu1(A), 6f4q(A), 6f4s(A), 6f4t(A), 6i9m(A), 6i9n(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6f4q(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6f4t(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6f4t(A).