Ligand clusters for UniProt code Q8DQQ1

Ligand clusters for Q8DQQ1: VanY domain-containing protein from Streptococcus pneumoniae (strain ATCC BAA-255 / R6)

		Top 6 (of 10) ligand clusters Cluster 1. 3 ligand types 6 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 2 ligand types 4 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 3 ligands
Representative protein: 4oxdA

Structures

PDB		Schematic diagram
4oxdA
4oxdC
4ox5A
4oxdE

Cluster 1 contains 3 ligand types

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Ligand		Description
_Zn		1. Metal: _ZN × 4 PDB codes: 4ox5(A), 4oxd(A),
		2. Ligand: DAL × 1 D-Alanine PDB code: 4ox5(A).
		3. Ligand: MUB-ALA-ZGL-LYS-DSG × 1 MUB=N-Acetyl-Alpha-Muramic acid, ZGL=D-Alpha-Glutamine, DSG=D-Asparagine. PDB code: 4oxd(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: MUB-ALA-ZGL-LYS-DSG × 1 MUB=N-Acetyl-Alpha-Muramic acid, ZGL=D-Alpha-Glutamine, DSG=D-Asparagine. PDB code: 4oxd(C).

Cluster 3 contains 2 ligand types

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Ligand		Description
_Zn		1. Metal: _ZN × 3 PDB codes: 4oxd(C),
		2. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 4ox5(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 4ox5(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
_Zn		1. Metal: _ZN × 1 PDB code: 4ox5(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Zn		1. Metal: _ZN × 3 PDB codes: 4ox5(A), 4oxd(C),