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EBI
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Ligand clusters for UniProt code Q8A1G2
Ligand clusters for Q8A1G2: Starch-binding protein SusD from Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Top 6 (of 9) ligand clusters
Cluster 1.
4 ligand types
5 ligands
Cluster 2.
3 ligand types
6 ligands
Cluster 3.
1 ligand type
3 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3ck9A
Structures
PDB
Schematic diagram
3ck9
A
3ck8
A
3ckb
A
3ckc
A
3ck7
A
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
GLC-GLC-GLC-GLC-GLC-GLC-GLC × 2
GLC
=Alpha-D-Glucopyranose.
PDB codes:
3ck8
(A),
3ck9
(A).
2. Ligand:
GLC-GLC-GLC × 1
GLC
=Alpha-D-Glucopyranose.
PDB code:
3ckb
(A).
3. Ligand:
GLC-GLC-GLC-GLC-GLC-GLC × 1
GLC
=Alpha-D-Glucopyranose.
PDB code:
3ck7
(A).
4. Ligand:
MES × 1
2-(N-Morpholino)-Ethanesulfonic acid
PDB code:
3ckc
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
EDO × 4
1,2-Ethanediol
PDB codes:
3ck8
(A),
3ck9
(A),
3ckc
(A).
2. Ligand:
PEG × 1
Di(hydroxyethyl)ether
PDB code:
3ckc
(A).
_Ca
3. Metal:
_CA × 1
PDB code:
3ckc
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 3
1,2-Ethanediol
PDB codes:
3ck8
(A),
3ck9
(A),
3ckc
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 2
1,2-Ethanediol
PDB codes:
3ck8
(A),
3ck9
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 2
1,2-Ethanediol
PDB codes:
3ck8
(A),
3ck9
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3ck8
(A).