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Ligand clusters for UniProt code Q8A1G2

Ligand clusters for Q8A1G2: Starch-binding protein SusD from Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)

Top 6 (of 9) ligand clusters
Cluster 1.
4 ligand types
5 ligands
Cluster 2.
3 ligand types
6 ligands
Cluster 3.
1 ligand type
3 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3ck9A  
JSmol
 

Structures

PDB   Schematic diagram
3ck9A    
3ck8A    
3ckbA    
3ckcA    
3ck7A    

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: GLC-GLC-GLC-GLC-GLC-GLC-GLC × 2
GLC=Alpha-D-Glucopyranose.
PDB codes: 3ck8(A), 3ck9(A).


 
2. Ligand: GLC-GLC-GLC × 1
GLC=Alpha-D-Glucopyranose.
PDB code: 3ckb(A).


 
3. Ligand: GLC-GLC-GLC-GLC-GLC-GLC × 1
GLC=Alpha-D-Glucopyranose.
PDB code: 3ck7(A).


 
4. Ligand: MES × 1
2-(N-Morpholino)-Ethanesulfonic acid
PDB code: 3ckc(A).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: EDO × 4
1,2-Ethanediol
PDB codes: 3ck8(A), 3ck9(A), 3ckc(A).


 
2. Ligand: PEG × 1
Di(hydroxyethyl)ether
PDB code: 3ckc(A).

_Ca
 
3. Metal: _CA × 1
PDB code: 3ckc(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 3
1,2-Ethanediol
PDB codes: 3ck8(A), 3ck9(A), 3ckc(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 3ck8(A), 3ck9(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 3ck8(A), 3ck9(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 3ck8(A).

 

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