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Ligand clusters for UniProt code Q859P9

Ligand clusters for Q859P9: Virion DNA-directed RNA polymerase from Enterobacteria phage N4

2 ligand clusters
Cluster 1.
8 ligand types
19 ligands
Cluster 2.
2 ligand types
8 ligands
Representative protein: 3c46A  
JSmol
 

Structures

PDB   Schematic diagram
3c46A    
3q0aA    
3q22A    
4ff4A    
4ff1A    
 more ...

 

 Cluster 1 contains 8 ligand types

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Ligand Description

_Mn
 
1. Metal: _MN × 6
PDB codes: 3q23(A), 4ff2(A), 4ff3(A), 4ff4(A).

_Mg
 
2. Metal: _MG × 1
PDB code: 3q22(A).


 
3. Ligand: 5GP × 3
Guanosine-5'-Monophosphate
PDB codes: 4ff2(A), 4ff3(A), 4ff4(A).


 
4. Ligand: GTP × 3
Guanosine-5'-Triphosphate
PDB codes: 3q0a(A), 3q22(A),


 
5. Ligand: ATP × 2
Adenosine-5'-Triphosphate
PDB codes: 4ff2(A), 4ff3(A).


 
6. Ligand: G2P × 2
Phosphomethylphosphonic acid guanylate ester
PDB codes: 3q23(A),


 
7. Ligand: AMP × 1
Adenosine monophosphate
PDB code: 4ff4(A).


 
8. Ligand: POP × 1
Pyrophosphate 2-
PDB code: 4ff4(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: PO4 × 5
Phosphate ion
PDB codes: 3q0a(A), 4ff1(A), 4ff2(A), 4ff3(A), 4ff4(A).


 
2. Ligand: 2HP × 3
Dihydrogenphosphate ion
PDB codes: 3c46(A), 3q22(A), 3q23(A).

 

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