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Ligand clusters for UniProt code Q70LM7

Ligand clusters for Q70LM7: Linear gramicidin synthase subunit A from Brevibacillus parabrevis

Top 6 (of 15) ligand clusters
Cluster 1.
5 ligand types
10 ligands
Cluster 2.
3 ligand types
4 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6mfzA  
JSmol
 

Structures

PDB   Schematic diagram
6mfzA    
6mfyA    
6mfxA    
6mfwA    
5es5A    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: VAL × 3
valine
PDB codes: 5es7(A), 6mfw(A), 6mfx(A).


 
2. Ligand: APC × 4
Diphosphomethylphosphonic acid adenosyl ester
PDB codes: 5es7(A), 6mfw(A), 6mfx(A), 6ulz(A).


 
3. Ligand: 5S4 × 1
[(3~{r})-4-[[3-[2-[[(2~{s})-2-Azanyl-3-Methyl- Butanoyl]amino]ethylamino]-3-Oxidanylidene-
Propyl]amino]-2,2-Dimethyl-3-Oxidanyl-4-Oxidanylidene- Butyl] dihydrogen phosphate
PDB code: 5es8(A).


 
4. Ligand: KIV × 1
3-Methyl-2-Oxobutanoic acid
PDB code: 6ulz(A).


 
5. Ligand: SO4 × 1
Sulfate ion
PDB code: 5es5(A).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: PNS × 2
4'-Phosphopantetheine
PDB codes: 6mfy(A), 6mfz(A).


 
2. Ligand: 9EF × 1
N-[2-(Acetylamino)ethyl]-N~3~-[(2r)-2-Hydroxy-3,3- Dimethyl-4-(Phosphonooxy)butanoyl]-Beta-
Alaninamide
PDB code: 6mfx(A).


 
3. Ligand: JQG × 1
(2~{r})-~{N}-[3-[2-[[(2~{s})-2-Formamido-3-Methyl- Butanoyl]amino]ethylamino]-3-Oxidanylidene-
Propyl]-3, 3-Dimethyl-2-Oxidanyl-4-[Oxidanyl-Bis(oxidanylidene)- L^{6}-Phosphanyl]oxy-Butanamide
PDB code: 6mfw(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: FON × 2
N-{[4-({[(6r)-2-Amino-5-Formyl-4-Oxo-1,4,5,6,7,8- Hexahydropteridin-6-
Yl]methyl}amino)phenyl]carbonyl}- L-Glutamic acid
PDB codes: 5es7(A), 6mfw(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: PNS × 1
4'-Phosphopantetheine
PDB code: 5es9(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: PO4 × 1
Phosphate ion
PDB code: 6mfw(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: PO4 × 1
Phosphate ion
PDB code: 6mfy(A).

 

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