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Ligand clusters for UniProt code Q58719

Ligand clusters for Q58719: DNA double-strand break repair protein Mre11 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

5 ligand clusters
Cluster 1.
2 ligand types
2 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
2 ligand types
8 ligands
Representative protein: 3av0A  
JSmol
 

Structures

PDB   Schematic diagram
3av0A    
5f3wA    
5dnyA    
4tugC    
3auzA    

 

 Cluster 1 contains 2 ligand types

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Ligand Description


 
1. Ligand: IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code: 3av0(A).


 
2. Ligand: SO4 × 1
Sulfate ion
PDB code: 3av0(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 3auz(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 3av0(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code: 3av0(A).

 

 Cluster 5 contains 2 ligand types

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Ligand Description

_Mg
 
1. Metal: _MG × 6
PDB codes: 4tug(C), 5dny(A), 5f3w(A),

_Mn
 
2. Metal: _MN × 2
PDB codes: 3auz(A),

 

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