Ligand clusters for UniProt code Q56366

Ligand clusters for Q56366: DNA polymerase from Thermococcus sp. (strain 9oN-7)

		Top 6 (of 16) ligand clusters Cluster 1. 9 ligand types 18 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 2 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 4k8xA

Structures

PDB		Schematic diagram
4k8xA
6ishA
6isgA
6isiA
6is7A
		more ...

Cluster 1 contains 9 ligand types

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Ligand		Description
		1. Ligand: PPV × 3 pyrophosphoric acid Pyrophosphate PDB codes: 6isg(A), 6ish(A), 6isi(A).
_Mg		2. Metal: _MG × 3 PDB codes: 5omq(A), 5omv(A).
		3. Ligand: GOL × 2 glycerin Glycerol PDB codes: 5omq(A), 5omv(A).
_Mn		4. Metal: _MN × 2 PDB codes: 5omq(A), 5omv(A).
		5. Ligand: DTP × 2 2'-Deoxyadenosine 5'-Triphosphate PDB codes: 5omq(A), 5omv(A).
		6. Ligand: SO4 × 2 Sulfate ion PDB codes: 4k8x(A),
_Ca		7. Metal: _CA × 2 PDB codes: 6ish(A), 6isi(A).
		8. Ligand: B0U × 1 3-[2-[2-(2-Azanylethoxy)ethoxy]ethoxy]propanoic acid PDB code: 6isi(A).
		9. Ligand: B9X × 1 [(2r,3s,5r)-5-(6-Aminopurin-9-Yl)-2- (Phosphonooxymethyl)oxolan-3-Yl] 3-(2- Ethoxyethoxy) propanoate PDB code: 6ish(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: 5CY × 1 1-(3-Hydroxypropyl)-2-{(1e,3e,5e)-5-[1-(3- Hydroxypropyl)-3,3-Dimethyl-1,3-Dihydro-2h-Indol-2- Ylidene]penta-1,3-Dien-1-Yl}-3,3-Dimethyl-3h-Indolium PDB code: 4k8x(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: PGE × 2 Triethylene glycol PDB codes: 5omq(A), 5omv(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PGE × 1 Triethylene glycol PDB code: 5omv(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 4k8x(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 4k8x(A).