Ligand clusters for UniProt code Q15116

Ligand clusters for Q15116: Programmed cell death protein 1 from Homo sapiens

		6 ligand clusters Cluster 1. 6 ligand types 8 ligands Cluster 2. 2 ligand types 5 ligands Cluster 3. 1 ligand type 5 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 2 ligands Cluster 6. 1 ligand type 2 ligands
Representative protein: 6jjpC

Structures

PDB		Schematic diagram
6jjpC
7cu5E
6j15C
6k0yC
6jbtF
		more ...

Cluster 1 contains 6 ligand types

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 7cgw(C).
		2. Ligand: NAG-NAG-FUC × 3 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose. PDB codes: 5wt9(G), 6j15(C), 6jbt(F).
		3. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6k0y(C).
		4. Ligand: NAG-NAG-BMA-MAN-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 6jjp(C).
		5. Ligand: NAG-NAG-MAN-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 6j15(D).
		6. Ligand: NAG-NAG-MAN-MAN-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, MAN=Alpha-D-Mannopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 7cu5(E).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 3 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 6j15(C), 6jjp(C), 7cgw(C).
		2. Ligand: NAG-NAG-FUC × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose. PDB codes: 6jbt(F), 7cu5(E).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG × 5 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 6j15(C), 6jbt(F), 6jjp(C), 7cgw(C), 7cu5(E).

Cluster 4 contains 1 ligand type

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Ligand		Description
_Mg		1. Metal: _MG × 1 PDB code: 6umt(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
_Cl		1. Metal: _CL × 2 PDB codes: 6umu(A), 6umv(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Cl		1. Metal: _CL × 2 PDB codes: 6umu(A), 6umv(A).