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EBI
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Structure Databases
PDBsum
Ligand clusters for UniProt code Q13635
Ligand clusters for Q13635: Protein patched homolog 1 OS=Homo sapiens OX=9606 GN=PTCH1 PE=1 SV=2
Top 6 (of 14) ligand clusters
Cluster 1.
2 ligand types
8 ligands
Cluster 2.
2 ligand types
9 ligands
Cluster 3.
2 ligand types
5 ligands
Cluster 4.
2 ligand types
12 ligands
Cluster 5.
2 ligand types
13 ligands
Cluster 6.
2 ligand types
14 ligands
Representative protein: 6rmgA
Structures
PDB
Schematic diagram
6rmg
A
6dmo
A
6rvd
A
6n7h
A
6n7g
A
more ...
Cluster 1 contains 2 ligand types
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Ligand
Description
1. Ligand:
CLR × 4
cholesterol
Cholesterol
PDB codes:
6n7g
(A),
6n7h
(A),
6n7k
(A),
6rvd
(A).
2. Ligand:
Y01 × 4
Cholesterol hemisuccinate
PDB codes:
6dmb
(A),
6dmy
(A),
6rmg
(A),
6rtw
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
CLR × 4
cholesterol
Cholesterol
PDB codes:
6n7g
(A),
6n7h
(A),
6n7k
(A),
6rvd
(A).
2. Ligand:
Y01 × 5
Cholesterol hemisuccinate
PDB codes:
6dmb
(A),
6dmy
(A),
6rmg
(A),
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
CLR × 3
cholesterol
Cholesterol
PDB codes:
6n7g
(A),
6n7h
(A),
6n7k
(A).
2. Ligand:
PLM × 2
palmitic acid
Palmitic acid
PDB codes:
6d4j
(A),
6rvd
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
NAG × 9
n-acetylglucosamine
N-Acetyl-D-Glucosamine
PDB codes:
6d4j
(A),
6dmb
(A),
6dmo
(A),
6dmy
(A),
6n7g
(A),
6n7h
(A),
6n7k
(A),
6rmg
(A),
6rvd
(A).
2. Ligand:
NAG-NAG × 3
NAG
=N-Acetyl-D-Glucosamine.
PDB codes:
6d4h
(A),
6oeu
(A),
6oev
(A).
Cluster 5 contains 2 ligand types
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Ligand
Description
1. Ligand:
NAG × 11
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes:
6dmb
(A),
6dmo
(A),
6dmy
(A),
6n7g
(A),
6n7h
(A),
6n7k
(A),
6rmg
(A),
6rtw
(A),
6rtx
(A),
6rty
(A),
6rvd
(A).
2. Ligand:
NAG-NAG × 2
NAG
=N-Acetyl-D-Glucosamine.
PDB codes:
6d4h
(A),
6oeu
(A).
Cluster 6 contains 2 ligand types
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Ligand
Description
1. Ligand:
NAG × 10
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes:
6dmb
(A),
6dmo
(A),
6dmy
(A),
6n7g
(A),
6n7h
(A),
6n7k
(A),
6rmg
(A),
6rtw
(A),
6rty
(A),
6rvd
(A).
2. Ligand:
NAG-NAG × 4
NAG
=N-Acetyl-D-Glucosamine.
PDB codes:
6d4h
(A),
6d4j
(A),
6oeu
(A),
6oev
(A).