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EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code Q13478

Ligand clusters for Q13478: Interleukin-18 receptor 1 from Homo sapiens

Top 6 (of 15) ligand clusters
Cluster 1.
4 ligand types
6 ligands
 Cluster 2.
4 ligand types
7 ligands
 Cluster 3.
3 ligand types
5 ligands
 Cluster 4.
3 ligand types
5 ligands
 Cluster 5.
1 ligand type
1 ligand
 Cluster 6.
2 ligand types
3 ligands
Representative protein: 3wo4B  
JSmol
 

Structures

PDB   Schematic diagram
3wo4B    
3wo3J    
3wo3B    
4r6uC    
3wo3L    

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code: 4r6u(C).


 
2. Ligand: NAG-NAG-BMA × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB codes: 3wo3(J),


 
3. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 3wo3(B),


 
4. Ligand: NAG-NAG-BMA-MAN-MAN × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 3wo4(B).

 

 Cluster 2 contains 4 ligand types

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Ligand Description


 
1. Ligand: NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code: 4r6u(C).


 
2. Ligand: NAG-NAG-BMA-FUC × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, BMA=Beta-D-Mannopyranose.
PDB codes: 3wo3(L), 3wo4(B).


 
3. Ligand: NAG-NAG-FUC × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose.
PDB codes: 3wo3(B),


 
4. Ligand: SO4 × 2
Sulfate ion
PDB codes: 3wo3(B),

 

 Cluster 3 contains 3 ligand types

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Ligand Description


 
1. Ligand: NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code: 4r6u(C).


 
2. Ligand: NAG-NAG × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 3wo3(B),


 
3. Ligand: NAG-NAG-BMA × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB codes: 3wo3(J), 3wo4(B).

 

 Cluster 4 contains 3 ligand types

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Ligand Description


 
1. Ligand: NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code: 4r6u(C).


 
2. Ligand: NAG-NAG × 3
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 3wo3(J), 3wo4(B).


 
3. Ligand: NAG-NAG-BMA × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB code: 3wo3(B).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG-NAG-BMA-MAN-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 3wo3(J).

 

 Cluster 6 contains 2 ligand types

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Ligand Description


 
1. Ligand: NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code: 3wo3(J).


 
2. Ligand: NAG-NAG-FUC × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose.
PDB codes: 3wo3(B), 3wo4(B).

 

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