Ligand clusters for UniProt code Q12879

Ligand clusters for Q12879: Glutamate receptor ionotropic, NMDA 2A from Homo sapiens

		5 ligand clusters Cluster 1. 9 ligand types 9 ligands Cluster 2. 1 ligand type 10 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 5 ligands
Representative protein: 5kcjA

Structures

PDB		Schematic diagram
5kcjA
5h8qA
5tp9A
5h8nA
5i2kA
		more ...

Cluster 1 contains 9 ligand types

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Ligand		Description
		1. Ligand: 5YC × 1 7-[[Ethyl(phenyl)amino]methyl]-2-Methyl-[1,3, 4]thiadiazolo[3,2-A]pyrimidin-5-One PDB code: 5h8h(A).
		2. Ligand: 5YD × 1 4-[[(4-Fluorophenyl)sulfonylamino]methyl]-~{N}- (Pyridin-3-Ylmethyl)benzamide PDB code: 5h8n(A).
		3. Ligand: 5YE × 1 6-[[Ethyl-(4-Fluorophenyl)amino]methyl]-2,3-Dihydro- 1~{h}-Cyclopenta[3,4][1,3]thiazolo[1,4- ~{A}]pyrimidin- 8-One PDB code: 5h8q(A).
		4. Ligand: 67H × 1 7-{[Ethyl(4-Fluorophenyl)amino]methyl}-N,2-Dimethyl-5- Oxo-5h-[1,3]thiazolo[3,2-A]pyrimidine-3- Carboxamide PDB code: 5i2k(A).
		5. Ligand: 67J × 1 N-Ethyl-7-{[2-Fluoro-3-(Trifluoromethyl)phenyl]methyl}- 2-Methyl-5-Oxo-5h-[1,3]thiazolo[3,2- A]pyrimidine-3- Carboxamide PDB code: 5i2n(A).
		6. Ligand: 6RM × 1 7-[(4-Fluoranylphenoxy)methyl]-3-[(1~{r},2~{r})-2- (Hydroxymethyl)cyclopropyl]-2-Methyl- [1,3]thiazolo[3, 2-A]pyrimidin-5-One PDB code: 5kcj(A).
		7. Ligand: 6RV × 1 (1~{r},2~{r})-2-[7-[[5-Chloranyl-3-(Trifluoromethyl) pyrazol-1-Yl]methyl]-5-Oxidanylidene-2- (Trifluoromethyl)-[1,3]thiazolo[3,2-A]pyrimidin-3- Yl]cyclopropane-1-Carbonitrile PDB code: 5kdt(A).
		8. Ligand: 7H0 × 1 7-{[5-Chloro-3-(Trifluoromethyl)-1h-Pyrazol-1- Yl]methyl}-N-Ethyl-2-Methyl-5-Oxo-5h- [1,3]thiazolo[3, 2-A]pyrimidine-3-Carboxamide PDB code: 5tp9(A).
		9. Ligand: 7H2 × 1 (1r,2r)-2-(2-{[5-Chloro-3-(Trifluoromethyl)-1h-Pyrazol- 1-Yl]methyl}-7-Methyl-4-Oxo-4h-Pyrido[1,2- A]pyrimidin- 6-Yl)cyclopropane-1-Carbonitrile PDB code: 5tpa(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLU × 10 PDB codes: 5h8f(A), 5h8h(A), 5h8n(A), 5h8q(A), 5i2k(A), 5i2n(A), 5kcj(A), 5kdt(A), 5tp9(A), 5tpa(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5h8f(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5h8f(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: ACT × 5 Acetate ion PDB codes: 5h8h(A), 5h8q(A), 5kcj(A), 5kdt(A), 5tp9(A).